Gene detail

Detail information of GWHGAAZE008478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO54486.1	0	hypothetical protein CISIN_1g003970mg [Citrus sinensis]
Swissprot	tr\|Q9MAP5\|SBT33_ARATH	3E-145	Subtilisin-like protease SBT3.3 {ECO:0000303\|PubMed:16193095} (Precursor)
trEMBL	tr\|A0A067EU78\|A0A067EU78_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO54486.1}
TAIR10	AT4G26330.1	0	Subtilisin-like serine endopeptidase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	77225250	77237952	-
GWHAAZE00000002	mRNA	77225250	77237952	-
GWHAAZE00000002	exon	77237747	77237952	-
GWHAAZE00000002	exon	77237085	77237182	-
GWHAAZE00000002	exon	77236721	77236888	-
GWHAAZE00000002	exon	77235679	77236344	-
GWHAAZE00000002	exon	77230318	77230546	-
GWHAAZE00000002	exon	77229034	77229148	-
GWHAAZE00000002	exon	77227101	77227209	-
GWHAAZE00000002	exon	77225250	77225860	-
GWHAAZE00000002	CDS	77237747	77237952	-
GWHAAZE00000002	CDS	77237085	77237182	-
GWHAAZE00000002	CDS	77236721	77236888	-
GWHAAZE00000002	CDS	77235679	77236344	-
GWHAAZE00000002	CDS	77230318	77230546	-
GWHAAZE00000002	CDS	77229034	77229148	-
GWHAAZE00000002	CDS	77227101	77227209	-
GWHAAZE00000002	CDS	77225250	77225860	-

Transcript Sequence
>GWHTAAZE008486 ATGGCCGCTTCAAGTTTTCAATGTTTTTGGGGCCTATTACCCCTACTCTCTCATCTTTCATTTTATTTTGTTCTCTCCACTTCCACTTCTTATGTAAACTTTCTTTTCCCCCCCTTAAGTGCTTTTCTTTTTGGGCTAGTGGTCTCATATCTTCCCTTGTTTGTGTTTGTGATTCTTGTTAATTGTTTTCTTCATTTCCCTCACAGCAAAGAGGATGCGGAGGAATCAATGCTATATAGCTACAAGCATAGCTTCTCTGGGTTTTCCGCAATGCTTAACTCAAGCCAAGCAACCACCCTAGCAAGAATGAAAGGAGTGATATCAGTGTTCAAGAGTAGAACACAGGTTTTGGACACAACAAGAAGCTGGGATTTCATGGGTCTGAGCTCGGACTACACTACAAAGGCTACAGCCATTCATCCACCTCAACTAGCTTATGGAAGTGATGTAATTGTTGGGATTTTTGACTCAGGTATTTGGCCAAATTCTTCTAGTTTCCAAGAAGAGCCAGGCACTGGCCCTATTCCAAGATCATGGAAAGGAAAATGCGTATCCGGGGAAAAATTTGATCCAATAAAATCATGCAACCGCAAACTTATTGGTGCGCAGTACTACACAAAAGGCATAGAGAAAAAATACGGTCCTATAAACGCCACGTCCGAATACCGGTCTCCGCTTGACTTCCTTGGTCACGGGACCCACACGGCTTCCACAGCTGTCGGATCGGTTGTGAAAAACGCGAGCTTCTTTGGCTTCGGCCAGGGCACCGCCAGGGGTGGAGCCCCCAGAGCTAGGCTTGCGGTGTACAAAGTTTGTTGGAGCGATAAAAACTTTAACGGAAGGTGCACTGATGCAGATATAATGGCGGCTTTTGACGATGCGTTGCATGACGGTGTCAATGTTATATCGGCTTCTTTCGGCCCTCCTGTACCATTGATTCCGTTTTTCGAATCAACTGGTGATATCGTTTCCTTTCATGCCATGCAACTCGGCGTGAGTGTGGTGTTTTCGGCGGGTAATGATGGTCCCGACCCATCTTTGTTGCGGAACGTTAATCCGTGGAGCATTTGTGTAGCTGCTTCTACGATCGATCGGACATTTCCAACACAAATTCTTCTGGATAATAATCTCTTTCATGGAAATTGGAGAAACACAACAGCAAAAGGAAGGGTGCTTTTGTGCTTGTCTACGGTGGGACCCGTAACCAGCGGCGAGGCAGAACTGGCGGCGCGTAAGGCCAACGCCTTGGCCTTGATATTTGTGGAGCCTCTCACGCGCCAAATTGCTGACGTGGATATCATCCCCACGGTCCGCGTTGATTTCATTCAAGGCACCAAAATTGCTAACTATCTTGCTGATTCGTACTTTACACCAAAAGTGCAGATATCAGCGAGTAGGACAGCTATCATGGAGTCACCAGCTCCTATGGTTGCTTATTTTTCTTCCAGAGGCCCAAGCACACTCTCACCTGATATTCTCAAGTCCGGGACGTCAATGTCTTGCCCTCATGTGACCGGCGTGGTTGCCCTCGTCAAATCCGCGCACCCCAACTGGTCTCCTGCCGCGATCAAGTCTGCACTCATGACCACAGCTTACAATGAAGATGACAGCCATGACAGTATTCTTGCCGGTGGGTCAATGAAAGTGTCCGATCCCTTCGACATTGGTTCCGGTCACATTGATCCATTAAAAGCACTTGATCCGGGCCTAGTTTATGACCTCAAGACTAGTGACTACATTCTATATCTTTGTAATTGTGGCTACACTCAAGATCAAATCAGCCATATGGTCCTAGATCTCGGTCCGAGTACTGATTGGACAAGTTTCCCAAGAGGACACACTATCAACACGAATATTAACTACCCTTCCATAATGATCTCCAATCTCCAATCGACAACTACGGTTAAGAGGACTGTTCGAAACGTGGGTCATAAGAAAACAGCTCTGTATTTTTCTAAGGTGGCGAGTCCTAATGGCGTGGAAGTGGTTGTTTGGCCTCGGGTTCTAGTTTTTACATGCTTTAGAGAAGAAGTTTCTTATTATGTGACTTTTAAACCGATGAAGTGTTCGGAAGGGAGATTTGATTTTGGTGAGATTGTTTGGTCGGATGGGTTCCATTTCGTTAGAAGTCCGTTGGTTGTGTTTGTCAACACGACTAACGCTGCTCTTGCTTGGGATAGCACTGCTTCTATGGCTAGCTAA

Network for GWHGAAZE008478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0196

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05922.17	Inhibitor_I9	71	113	2.40E-09
PF00082.23	Peptidase_S8	147	535	1.10E-34
PF17766.2	fn3_6	618	714	9.70E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004252	molecular_function	serine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.731
	SRR3591706	second leaf	0.213
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.474
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.721
	SRR3591711	White flower	0.152
	SRR3591712	Green floral bud	1.484
	SRR3591713	Yellow flower	0.029
SRP173429	SRR8316895	Juvenile bud stage	0.280
	SRR8316896	Juvenile bud stage	0.787
	SRR8316897	Juvenile bud stage	0.528
	SRR8316894	Third green stage	0.318
	SRR8316900	Third green stage	0.516
	SRR8316901	Third green stage	0.610
	SRR8316898	Complete white stage	0.020
	SRR8316899	Complete white stage	0.086
	SRR8316903	Complete white stage	0.069
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.078
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.016
	SRR8316907	Gold flowering stage	0.024
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.308
	SRR6706287	Light intensity 50%	0.183
	SRR6706288	Light intensity 20%	0.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.556
	CNS0095593	Slightly white alabastrum(diploid) 2	0.723
	CNS0095594	Slightly white alabastrum(diploid) 3	0.349
	CNS0095595	Whole white alabastrum(diploid) 2	0.231
	CNS0095596	Whole white alabastrum(diploid) 3	0.420
	CNS0095597	Whole white alabastrum(diploid) 4	0.235
	CNS0095598	Silvery flower (diploied) 1	0.064
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.054
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.022
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.694
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.246
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.332
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.317
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.905
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.055
	CNS0095612	Silvery flower (tetraploid) 3	0.091
	CNS0095613	Golden flower (tetraploid) 1	0.015
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.563
	CRR073298	Stem 2	0.716
	CRR073299	Stem 3	1.045
	CRR073300	Leaf 1	0.178
	CRR073301	Leaf 2	0.345
	CRR073302	Leaf 3	0.828
	CRR073303	Juvenile bud 1	0.060
	CRR073304	Juvenile bud 2	0.258
	CRR073305	Juvenile bud 3	0.027
	CRR073306	Third green 1	0.141
	CRR073307	Third green 2	0.039
	CRR073308	Third green 3	0.075
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.021
	CRR073311	Second white 3	0.024
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.488
	CRR073319	Tawny withering 2	0.268
	CRR073320	Tawny withering 3	0.811