Detail information of GWHGAAZE008514


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006348226.14.4103E-102PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X3 [Solanum tuberosum]
Swissprottr|P0CH30|RING1_GOSHI6E-50E3 ubiquitin-protein ligase RING1
trEMBLtr|M1BJ75|M1BJ75_SOLTU2E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400046527}
TAIR10AT5G56340.11E-56RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7920661679207494+
GWHAAZE00000002mRNA7920661679207494+
GWHAAZE00000002exon7920661679206758+
GWHAAZE00000002exon7920678979206882+
GWHAAZE00000002exon7920691379207494+
GWHAAZE00000002CDS7920661679206758+
GWHAAZE00000002CDS7920678979206882+
GWHAAZE00000002CDS7920691379207494+
Transcript Sequence

Network for GWHGAAZE008514

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21401825.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.244
SRR3591706second leaf0.551
SRR3591707mature leaf2.431
SRR3591708Shoot apex0.911
SRR3591709Stem8.096
SRR3591710White floral bud166.543
SRR3591711White flower11.468
SRR3591712Green floral bud121.601
SRR3591713Yellow flower16.190
SRP173429 SRR8316895Juvenile bud stage 12.520
SRR8316896Juvenile bud stage 41.532
SRR8316897Juvenile bud stage 16.216
SRR8316894Third green stage 18.822
SRR8316900Third green stage 100.951
SRR8316901Third green stage 110.847
SRR8316898Complete white stage 11.645
SRR8316899Complete white stage 24.958
SRR8316903Complete white stage 14.224
SRR8316902Silver flowering stage13.100
SRR8316904Silver flowering stage18.634
SRR8316905Silver flowering stage7.843
SRR8316906Gold flowering stage 38.856
SRR8316907Gold flowering stage 28.455
SRR8316908Gold flowering stage 16.803
SRP132670SRR6706286Control46.842
SRR6706287Light intensity 50%52.707
SRR6706288Light intensity 20%45.174
CNP0000432CNS0095592Slightly white alabastrum(diploid) 197.221
CNS0095593Slightly white alabastrum(diploid) 281.435
CNS0095594Slightly white alabastrum(diploid) 3116.026
CNS0095595Whole white alabastrum(diploid) 2218.147
CNS0095596Whole white alabastrum(diploid) 3239.103
CNS0095597Whole white alabastrum(diploid) 4291.906
CNS0095598Silvery flower (diploied) 131.671
CNS0095599Silvery flower (diploied) 254.444
CNS0095600Silvery flower (diploied) 346.324
CNS0095601Golden flower (diploid) 138.017
CNS0095602Golden flower (diploid) 249.565
CNS0095603Golden flower (diploid) 346.122
CNS0095604Slightly white alabastrum(tetraploid) 1130.549
CNS0095605Slightly white alabastrum(tetraploid) 2150.071
CNS0095606Slightly white alabastrum(tetraploid) 33.682
CNS0095607Whole white alabastrum(tetraploid) 1260.029
CNS0095608Whole white alabastrum(tetraploid) 2300.727
CNS0095609Whole white alabastrum(tetraploid) 3129.021
CNS0095610Silvery flower (tetraploid) 115.576
CNS0095611Silvery flower (tetraploid) 223.110
CNS0095612Silvery flower (tetraploid) 346.371
CNS0095613Golden flower (tetraploid) 120.894
CNS0095614Golden flower (tetraploid) 216.447
CNS0095615Golden flower (tetraploid) 346.941
CRA001975CRR073297Stem 131.818
CRR073298Stem 232.054
CRR073299Stem 327.640
CRR073300Leaf 1109.433
CRR073301Leaf 271.860
CRR073302Leaf 344.773
CRR073303Juvenile bud 186.662
CRR073304Juvenile bud 266.271
CRR073305Juvenile bud 336.200
CRR073306Third green 161.119
CRR073307Third green 267.110
CRR073308Third green 360.358
CRR073309Second white 125.938
CRR073310Second white 241.789
CRR073311Second white 344.486
CRR073312Silver flowering 185.696
CRR073313Silver flowering 268.287
CRR073314Silver flowering 364.344
CRR073315Gold flowering 119.989
CRR073316Gold flowering 214.394
CRR073317Gold flowering 38.996
CRR073318Tawny withering 158.486
CRR073319Tawny withering 252.420
CRR073320Tawny withering 349.098