Detail information of GWHGAAZE008518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP43190.10hypothetical protein JCGZ_22742 [Jatropha curcas]
Swissprottr|O81027|HMGCL_ARATH0Hydroxymethylglutaryl-CoA lyase, mitochondrial
trEMBLtr|A0A067LFA7|A0A067LFA7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP43190.1}
TAIR10AT2G26800.12E-158Aldolase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene7940386879413272-
GWHAAZE00000002mRNA7940386879413272-
GWHAAZE00000002exon7941310679413272-
GWHAAZE00000002exon7941169079411897-
GWHAAZE00000002exon7941108479411266-
GWHAAZE00000002exon7940863379408713-
GWHAAZE00000002exon7940837979408542-
GWHAAZE00000002exon7940662979406765-
GWHAAZE00000002exon7940592679406041-
GWHAAZE00000002exon7940386879404448-
GWHAAZE00000002CDS7941310679413272-
GWHAAZE00000002CDS7941169079411897-
GWHAAZE00000002CDS7941108479411266-
GWHAAZE00000002CDS7940863379408713-
GWHAAZE00000002CDS7940837979408542-
GWHAAZE00000002CDS7940662979406765-
GWHAAZE00000002CDS7940592679406041-
GWHAAZE00000002CDS7940420079404448-
GWHAAZE00000002three_prime_UTR7940386879404199-
Transcript Sequence

Network for GWHGAAZE008518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00682.20HMGL-like1354085.00E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01640E4.1.3.4, HMGCL, hmgL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Butanoate metabolismmap00650
Synthesis and degradation of ketone bodiesmap00072
Valine, leucine and isoleucine degradationmap00280
Geraniol degradationmap00281
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0004419molecular_functionhydroxymethylglutaryl-CoA lyase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.940
SRR3591706second leaf31.164
SRR3591707mature leaf60.026
SRR3591708Shoot apex23.285
SRR3591709Stem93.465
SRR3591710White floral bud30.795
SRR3591711White flower29.267
SRR3591712Green floral bud23.928
SRR3591713Yellow flower35.158
SRP173429 SRR8316895Juvenile bud stage 16.516
SRR8316896Juvenile bud stage 20.983
SRR8316897Juvenile bud stage 9.680
SRR8316894Third green stage 8.271
SRR8316900Third green stage 29.071
SRR8316901Third green stage 29.072
SRR8316898Complete white stage 16.536
SRR8316899Complete white stage 36.081
SRR8316903Complete white stage 20.385
SRR8316902Silver flowering stage13.500
SRR8316904Silver flowering stage14.675
SRR8316905Silver flowering stage6.241
SRR8316906Gold flowering stage 32.133
SRR8316907Gold flowering stage 25.244
SRR8316908Gold flowering stage 25.035
SRP132670SRR6706286Control28.330
SRR6706287Light intensity 50%28.141
SRR6706288Light intensity 20%31.166
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.571
CNS0095593Slightly white alabastrum(diploid) 224.901
CNS0095594Slightly white alabastrum(diploid) 321.073
CNS0095595Whole white alabastrum(diploid) 226.995
CNS0095596Whole white alabastrum(diploid) 323.038
CNS0095597Whole white alabastrum(diploid) 426.312
CNS0095598Silvery flower (diploied) 118.746
CNS0095599Silvery flower (diploied) 222.879
CNS0095600Silvery flower (diploied) 324.814
CNS0095601Golden flower (diploid) 122.914
CNS0095602Golden flower (diploid) 226.591
CNS0095603Golden flower (diploid) 326.706
CNS0095604Slightly white alabastrum(tetraploid) 123.153
CNS0095605Slightly white alabastrum(tetraploid) 217.732
CNS0095606Slightly white alabastrum(tetraploid) 332.650
CNS0095607Whole white alabastrum(tetraploid) 125.384
CNS0095608Whole white alabastrum(tetraploid) 231.831
CNS0095609Whole white alabastrum(tetraploid) 326.545
CNS0095610Silvery flower (tetraploid) 131.798
CNS0095611Silvery flower (tetraploid) 236.561
CNS0095612Silvery flower (tetraploid) 329.844
CNS0095613Golden flower (tetraploid) 125.842
CNS0095614Golden flower (tetraploid) 234.593
CNS0095615Golden flower (tetraploid) 326.384
CRA001975CRR073297Stem 122.532
CRR073298Stem 218.530
CRR073299Stem 317.918
CRR073300Leaf 130.602
CRR073301Leaf 232.493
CRR073302Leaf 327.178
CRR073303Juvenile bud 129.750
CRR073304Juvenile bud 223.376
CRR073305Juvenile bud 327.889
CRR073306Third green 132.298
CRR073307Third green 222.297
CRR073308Third green 324.892
CRR073309Second white 137.933
CRR073310Second white 232.124
CRR073311Second white 337.982
CRR073312Silver flowering 145.927
CRR073313Silver flowering 248.138
CRR073314Silver flowering 341.055
CRR073315Gold flowering 19.926
CRR073316Gold flowering 29.113
CRR073317Gold flowering 311.173
CRR073318Tawny withering 117.978
CRR073319Tawny withering 215.576
CRR073320Tawny withering 320.626