Gene detail

Detail information of GWHGAAZE008531

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007021323.1	1.93047E-55	F-box and associated interaction domains-containing protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-18	F-box protein CPR30
trEMBL	tr\|A0A061F7J2\|A0A061F7J2_THECC	7E-56	F-box and associated interaction domains-containing protein, putative isoform 1 {ECO:0000313\|EMBL:EOY12848.1}
TAIR10	AT4G12560.2	4E-17	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	80413368	80415082	+
GWHAAZE00000002	mRNA	80413368	80415082	+
GWHAAZE00000002	exon	80413368	80413396	+
GWHAAZE00000002	exon	80413585	80414527	+
GWHAAZE00000002	exon	80415074	80415082	+
GWHAAZE00000002	CDS	80413368	80413396	+
GWHAAZE00000002	CDS	80413585	80414527	+
GWHAAZE00000002	CDS	80415074	80415082	+

Transcript Sequence
>GWHTAAZE008539 ATGCCGCCGCATCGGAGGTGGCAAGTGAGACTTCCAGTGAAGAGTTTGGTTAGATTTAGAAGCGTTTGCAAATCATGGCACTCCTTCATCAGTTCCCCCAATTTCATCACCACCCACCTCAATCATAACAAAAATCGTAATAATCAAATACTTATAAGTGATTTATATTTGAATGGATATCATTGCAATCGTGGGAAAGAGTACTATTATGCATATAGTGACAACGGAACATCTGATAAGCTTGCGACTTTGCATGTTCCATTCACTTGCAAAGATGGGACTTTTCACATCTTAGGTAGTTCTAATGGACTAGTCTTCTTTTGTGACAACGAGTTTGGTTGTAAGCAAACCATGTATTTATGGAACCCATCCATTCATAAATTCATCACCATTCCGAAGCCTAAAGTTACCATTGAATCACATGGCCCTTTTGACCATGCTTTAGGATTTGGCTTCGAAGCTGCAACCAATGACTACAAGATTGTGAGGCTTGCTTTTCTCCAATCAAATACTATTAGAGCACCGGTAAAGGTAGAGCTTTATGAGCTTAGTACGGGTTCTTGGCGAAGCGTTAATGTTGAAGACTTCAAATACGTTGTTGATAGGAAGTACGAAGACCACGCCTTTTTGAATGGTGTGATCCATTGGATTGGATATGAAATAGATGGCCTTTTTCCTGAGTTTGTTGTGACATTCGACATGAAGAATGAGGAGTTGGGTGTTGTGATGATGCCGCCTAGTCTAGTGTGGCCATCGTTAATATTTGTATTTCGAGATTCACTTTATTTGACAGAACAAATTCAAACAGATAAACATTATGGCATATGGATGATGAATGACTGTGGCGTAGCAGAGTCTTGGACAAAGGTGATCAACATTGATATGCCCGATTATTATTGGGCGCCACCATTTGGCTTTAGAGATAACAGAGATATCTTACTCTCGAGAATAAGGACTTGGTTTGGGCATGCGCTGTGTTAA

Network for GWHGAAZE008531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	10	37	1.60E-05
PF07734.14	FBA_1	209	298	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.111
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.520
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.199
	SRR8316897	Juvenile bud stage	1.497
	SRR8316894	Third green stage	0.189
	SRR8316900	Third green stage	1.261
	SRR8316901	Third green stage	1.576
	SRR8316898	Complete white stage	0.332
	SRR8316899	Complete white stage	0.300
	SRR8316903	Complete white stage	0.314
	SRR8316902	Silver flowering stage	0.222
	SRR8316904	Silver flowering stage	0.140
	SRR8316905	Silver flowering stage	0.209
	SRR8316906	Gold flowering stage	0.142
	SRR8316907	Gold flowering stage	0.424
	SRR8316908	Gold flowering stage	0.051
SRP132670	SRR6706286	Control	0.100
	SRR6706287	Light intensity 50%	0.259
	SRR6706288	Light intensity 20%	0.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.847
	CNS0095593	Slightly white alabastrum(diploid) 2	0.584
	CNS0095594	Slightly white alabastrum(diploid) 3	0.504
	CNS0095595	Whole white alabastrum(diploid) 2	1.548
	CNS0095596	Whole white alabastrum(diploid) 3	2.322
	CNS0095597	Whole white alabastrum(diploid) 4	1.939
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.262
	CNS0095600	Silvery flower (diploied) 3	0.467
	CNS0095601	Golden flower (diploid) 1	0.310
	CNS0095602	Golden flower (diploid) 2	0.253
	CNS0095603	Golden flower (diploid) 3	0.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.432
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.997
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.875
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.003
	CNS0095612	Silvery flower (tetraploid) 3	0.120
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.100
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.013
	CRR073298	Stem 2	0.202
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.775
	CRR073301	Leaf 2	0.393
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.012
	CRR073305	Juvenile bud 3	0.087
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.168
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.006
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.526