Gene detail

Detail information of GWHGAAZE008552

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011080490.1	5.64312E-78	PREDICTED: dr1-associated corepressor [Sesamum indicum]
Swissprot	tr\|Q9ZVL3\|NFYC3_ARATH	0.000001	Nuclear transcription factor Y subunit C-3
trEMBL	tr\|A0A059ABE2\|A0A059ABE2_EUCGR	6E-82	Uncharacterized protein {ECO:0000313\|EMBL:KCW51049.1}
TAIR10	AT5G19490.1	3E-39	Histone superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	82514973	82519057	+
GWHAAZE00000002	mRNA	82514973	82519057	+
GWHAAZE00000002	exon	82514973	82515027	+
GWHAAZE00000002	exon	82515224	82515317	+
GWHAAZE00000002	exon	82515942	82516061	+
GWHAAZE00000002	exon	82516157	82516214	+
GWHAAZE00000002	exon	82518262	82518319	+
GWHAAZE00000002	exon	82518675	82519057	+
GWHAAZE00000002	CDS	82514973	82515027	+
GWHAAZE00000002	CDS	82515224	82515317	+
GWHAAZE00000002	CDS	82515942	82516061	+
GWHAAZE00000002	CDS	82516157	82516214	+
GWHAAZE00000002	CDS	82518262	82518319	+
GWHAAZE00000002	CDS	82518675	82519057	+

Transcript Sequence
>GWHTAAZE008560 ATGCAAGCTGATGAGGATGTGGGGAAGATTGCTATGGCTGTACCTCTTCTAGTTTCAAAAGCTTTGGAACTATTTCTACAAGATCTCTGTGATCGGACATATGAGATAACTCTTCAGAGGGGAGCAAAGACCATGAATTCTTTGCATTTAAAACAGTGTGTACAGAGCTTTAATGTGTTTGATTTCCTGCGGGACATTGTTAGTAAGGTTCCTGATTTAGGCGGTTCTGAGGCTACTACTGGAGAGGATAGATGTCCTGTTAAAAGGAGGAAAGTTTCTGATGAAGAAGATATGGACAGTGATGATGAGTCAAAGAAGGGTAGGATGTCTTGGCCATATTTCCACTATATTGATGATGAGATCGAGCACGAACAAGAATTCTCAGTAGCAGATCGAGATTCGGCCACTGCCCATCACGAGAAATTTGAAGTCGATTCAGATTCTCCTCACAGCAGCAATGAGAAGCCAAAGCAAAACCACCACGAAAGGATTACCAACGGGTCAAATGCTGTAGTTGACTCAAAGGAGAACGTTGCTGCTGTCCGAAACTTCGATCTCAATGTGGACCTAAATGAGAATGGGGACTCTGCAGTCGAACTGGAGCCTTCTAGCTCATCAACACCTAAGCCTATTCTTGAACTGAAGCAAGATGAATACCCAGGCTGGTCACTAGCTGATGTGGAAAGAATGGCTATCGATCCCATTCAAATAGCCAATCTAAATACCCGGATGGACGAAGAGGAGGAAGATTACGATGAAGAAGGATAA

Network for GWHGAAZE008552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00808.24	CBFD_NFYB_HMF	1	54	5.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.403
	SRR3591706	second leaf	6.418
	SRR3591707	mature leaf	7.930
	SRR3591708	Shoot apex	11.827
	SRR3591709	Stem	7.840
	SRR3591710	White floral bud	8.328
	SRR3591711	White flower	7.079
	SRR3591712	Green floral bud	6.344
	SRR3591713	Yellow flower	7.487
SRP173429	SRR8316895	Juvenile bud stage	7.076
	SRR8316896	Juvenile bud stage	12.145
	SRR8316897	Juvenile bud stage	4.714
	SRR8316894	Third green stage	4.873
	SRR8316900	Third green stage	6.750
	SRR8316901	Third green stage	6.994
	SRR8316898	Complete white stage	1.805
	SRR8316899	Complete white stage	6.738
	SRR8316903	Complete white stage	5.020
	SRR8316902	Silver flowering stage	3.932
	SRR8316904	Silver flowering stage	4.128
	SRR8316905	Silver flowering stage	2.080
	SRR8316906	Gold flowering stage	9.007
	SRR8316907	Gold flowering stage	7.708
	SRR8316908	Gold flowering stage	9.005
SRP132670	SRR6706286	Control	6.140
	SRR6706287	Light intensity 50%	6.023
	SRR6706288	Light intensity 20%	6.365
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.443
	CNS0095593	Slightly white alabastrum(diploid) 2	6.849
	CNS0095594	Slightly white alabastrum(diploid) 3	10.185
	CNS0095595	Whole white alabastrum(diploid) 2	9.092
	CNS0095596	Whole white alabastrum(diploid) 3	6.228
	CNS0095597	Whole white alabastrum(diploid) 4	7.573
	CNS0095598	Silvery flower (diploied) 1	9.504
	CNS0095599	Silvery flower (diploied) 2	8.815
	CNS0095600	Silvery flower (diploied) 3	6.356
	CNS0095601	Golden flower (diploid) 1	8.548
	CNS0095602	Golden flower (diploid) 2	8.380
	CNS0095603	Golden flower (diploid) 3	7.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.848
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.411
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.112
	CNS0095610	Silvery flower (tetraploid) 1	6.221
	CNS0095611	Silvery flower (tetraploid) 2	6.371
	CNS0095612	Silvery flower (tetraploid) 3	5.438
	CNS0095613	Golden flower (tetraploid) 1	6.742
	CNS0095614	Golden flower (tetraploid) 2	7.159
	CNS0095615	Golden flower (tetraploid) 3	5.320
CRA001975	CRR073297	Stem 1	7.135
	CRR073298	Stem 2	7.515
	CRR073299	Stem 3	6.434
	CRR073300	Leaf 1	5.785
	CRR073301	Leaf 2	5.820
	CRR073302	Leaf 3	2.543
	CRR073303	Juvenile bud 1	3.861
	CRR073304	Juvenile bud 2	3.694
	CRR073305	Juvenile bud 3	2.136
	CRR073306	Third green 1	1.519
	CRR073307	Third green 2	1.773
	CRR073308	Third green 3	1.966
	CRR073309	Second white 1	0.515
	CRR073310	Second white 2	1.673
	CRR073311	Second white 3	1.583
	CRR073312	Silver flowering 1	2.299
	CRR073313	Silver flowering 2	2.289
	CRR073314	Silver flowering 3	3.014
	CRR073315	Gold flowering 1	4.072
	CRR073316	Gold flowering 2	8.601
	CRR073317	Gold flowering 3	5.922
	CRR073318	Tawny withering 1	6.291
	CRR073319	Tawny withering 2	8.007
	CRR073320	Tawny withering 3	4.193