Gene detail

Detail information of GWHGAAZE008558

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011090210.1	1.6749E-127	PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Sesamum indicum]
Swissprot	tr\|P0CH30\|RING1_GOSHI	3E-44	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|K4AT96\|K4AT96_SOLLC	1E-126	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g009000.2.1}
TAIR10	AT2G40830.3	1E-70	RING-H2 finger C1A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	82612782	82613768	-
GWHAAZE00000002	mRNA	82612782	82613768	-
GWHAAZE00000002	exon	82613660	82613768	-
GWHAAZE00000002	exon	82613012	82613608	-
GWHAAZE00000002	exon	82612782	82612981	-
GWHAAZE00000002	CDS	82613660	82613768	-
GWHAAZE00000002	CDS	82613012	82613608	-
GWHAAZE00000002	CDS	82612782	82612981	-

Transcript Sequence
>GWHTAAZE008566 ATGTCAAGTGGTGGAAGTACGCATTGGTGCTATGAATGCAGTCAGGCAGTTCGGCTTCGAGGCCGTAATGTGGTTTGTCCGAATTGCAATGGAGGCTTTGTTCAAGAACATGACAATTCGGCAGATGTTGGATTCGTGGAACCCTTCTCCGACCCAAGAGTTGGGATTATGGATGCTTTTGCGGCTTTTATGAGGCAAAGAATGGCTGGAAGAAACCCTAATTTTGACATTAGAGGAAGATCATCCGGTATGGTCCCTGAGCATGCTTTTGGCTTTGGTTCTGGTCCGTGGTTGATATTCCACCACGGACAAGTCCCCGTCAGAATGTCTGATAATGACGGGTTCGACTTATTTTTCAATAGCAACCCACGATTCGGGGGGCAACGCAGGGGAACTAATGCGGCAGGCGATTTCTTTATGGGGCCGGGGCTGCAGGATTTGATCGAACAGCTTGCACTGAATGACAGACAGGGCCCACCACCGGCGCCTCGTTCCGCAATTGACGCGATGCCCATAGTTAGGATCGCGCAGAGGCATCTCAACACTGATTCACACTGCCCGGTTTGCAAAGACAAGTTCGAGTTGGGGTCGGAAGCGAGGCAGATGCCTTGTAACCACATGTATCATTCTGATTGCATTGTTCCTTGGTTGGTTCAGCACAACTCCTGCCCTGTTTGCCGCGAGGTGCTGCCGGCTCAAGTTTCTGCAAGTAGTGGTGGCAGTGGAAGCAGGGAGAATGGTGGACCAAACCAGGGGAGGAGGAACATGCTTTCATCTTTGTGGCCTTTTCGCTCATCTAACCAGAACAGTCGTAATCACACTGAAACAGGCGGAAGTAGCTCGGCGGCGGCTACATATGAAGAGAACAACAGGATGGGTAACTCTGGTTGGCCTTTTGATTATTGA

Network for GWHGAAZE008558

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14369.7	zinc_ribbon_9	7	36	3.50E-10
PF13639.7	zf-RING_2	185	227	4.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	molecular_function	ubiquitin protein ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	79.375
	SRR3591706	second leaf	54.390
	SRR3591707	mature leaf	118.036
	SRR3591708	Shoot apex	48.124
	SRR3591709	Stem	112.705
	SRR3591710	White floral bud	86.707
	SRR3591711	White flower	124.445
	SRR3591712	Green floral bud	84.890
	SRR3591713	Yellow flower	89.656
SRP173429	SRR8316895	Juvenile bud stage	56.142
	SRR8316896	Juvenile bud stage	69.889
	SRR8316897	Juvenile bud stage	32.833
	SRR8316894	Third green stage	24.133
	SRR8316900	Third green stage	82.775
	SRR8316901	Third green stage	85.056
	SRR8316898	Complete white stage	44.737
	SRR8316899	Complete white stage	173.649
	SRR8316903	Complete white stage	59.945
	SRR8316902	Silver flowering stage	46.436
	SRR8316904	Silver flowering stage	49.216
	SRR8316905	Silver flowering stage	32.635
	SRR8316906	Gold flowering stage	117.064
	SRR8316907	Gold flowering stage	115.548
	SRR8316908	Gold flowering stage	116.258
SRP132670	SRR6706286	Control	145.733
	SRR6706287	Light intensity 50%	125.444
	SRR6706288	Light intensity 20%	127.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	71.331
	CNS0095593	Slightly white alabastrum(diploid) 2	63.777
	CNS0095594	Slightly white alabastrum(diploid) 3	64.586
	CNS0095595	Whole white alabastrum(diploid) 2	59.650
	CNS0095596	Whole white alabastrum(diploid) 3	49.541
	CNS0095597	Whole white alabastrum(diploid) 4	57.354
	CNS0095598	Silvery flower (diploied) 1	97.156
	CNS0095599	Silvery flower (diploied) 2	105.311
	CNS0095600	Silvery flower (diploied) 3	122.775
	CNS0095601	Golden flower (diploid) 1	127.811
	CNS0095602	Golden flower (diploid) 2	134.934
	CNS0095603	Golden flower (diploid) 3	129.527
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.568
	CNS0095606	Slightly white alabastrum(tetraploid) 3	105.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	38.909
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.220
	CNS0095610	Silvery flower (tetraploid) 1	133.634
	CNS0095611	Silvery flower (tetraploid) 2	128.057
	CNS0095612	Silvery flower (tetraploid) 3	89.356
	CNS0095613	Golden flower (tetraploid) 1	90.884
	CNS0095614	Golden flower (tetraploid) 2	116.341
	CNS0095615	Golden flower (tetraploid) 3	78.482
CRA001975	CRR073297	Stem 1	76.162
	CRR073298	Stem 2	69.118
	CRR073299	Stem 3	94.887
	CRR073300	Leaf 1	77.838
	CRR073301	Leaf 2	88.258
	CRR073302	Leaf 3	97.052
	CRR073303	Juvenile bud 1	115.400
	CRR073304	Juvenile bud 2	92.935
	CRR073305	Juvenile bud 3	134.058
	CRR073306	Third green 1	61.683
	CRR073307	Third green 2	55.309
	CRR073308	Third green 3	54.443
	CRR073309	Second white 1	77.701
	CRR073310	Second white 2	49.503
	CRR073311	Second white 3	41.219
	CRR073312	Silver flowering 1	48.181
	CRR073313	Silver flowering 2	54.223
	CRR073314	Silver flowering 3	38.870
	CRR073315	Gold flowering 1	121.271
	CRR073316	Gold flowering 2	151.543
	CRR073317	Gold flowering 3	171.509
	CRR073318	Tawny withering 1	126.142
	CRR073319	Tawny withering 2	99.678
	CRR073320	Tawny withering 3	112.977