Gene detail

Detail information of GWHGAAZE008567

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09733.1	3.933E-148	unnamed protein product [Coffea canephora]
Swissprot	tr\|A2WW87\|GAM1_ORYSI	4E-81	Transcription factor GAMYB
trEMBL	tr\|A0A068UQ74\|A0A068UQ74_COFCA	1E-148	Coffea canephora DH200=94 genomic scaffold, scaffold_40 {ECO:0000313\|EMBL:CDP09733.1}
TAIR10	AT3G11440.1	6E-64	myb domain protein 65

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	82980884	82986513	+
GWHAAZE00000002	mRNA	82980884	82986513	+
GWHAAZE00000002	exon	82980884	82981243	+
GWHAAZE00000002	exon	82983974	82984958	+
GWHAAZE00000002	exon	82986063	82986513	+
GWHAAZE00000002	CDS	82980884	82981243	+
GWHAAZE00000002	CDS	82983974	82984958	+
GWHAAZE00000002	CDS	82986063	82986301	+
GWHAAZE00000002	three_prime_UTR	82986302	82986513	+

Transcript Sequence
>GWHTAAZE008575 ATGAGTAATATGACAAGTGAAAGTAAGGACATAATGATGTCCGATGACTGCGTAGATTCGCCATCTTTTGATGAAGCTAATAGTAGCCTAGAAGGCAGTAATAGTATGCTGAAGAAAGGTCCGTGGACATCTGCAGAAGATGCAATTTTGGTGGATTACGTAAACAAGCATGGAGAGGGGAATTGGAATGCTGTACAGAAGCACTCGGGACTTTCCCGTTGTGGAAAAAGTTGCCGTTTACGTTGGGCTAATCACCTAAGGCCAGATTTGAAAAAAGGCGCGTTTACACCGGGGGAAGAGCATCATATCATTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTACCAGGACGTACTGATAACGAAATAAAGAACTTCTGGAACACGAGAATCAAGAGACGGCAGCGTGCTGGTTTACCAATTTACCCTCCCGATATCTGTTCACGAGCATTGATCGACAGCCAAAAAATCCACAATATGAGTACATTTTCAAATGGAAACAATACACTGGATCCCAAAAATTTCCCAACCTATAACTTAGATATTCCGCCTGTGGAGTTCGAGTACTTGGAACTAAATCAATCATCGTATCCACCACCAACTCTTCTCGATATTGCTTCGAGTACCGTGATTTCACAAGCCCTCGGTACTTCCTGTAGTAATAATAGCCTTTTTGTCCCACCTATCAACGATTTCTTTGATTGTTCCGAGAAGATTTTCGGGTTTTCTTCTTCTTCATTGTACGATGATAATAAGCTTAATGCTGATCTTTCATCATCATCATACTCGGGCAGCCATGCCCTTTTATTTAATGGCAACTTCTCTTCTTCGTGGCCCGCCTCGAAGCTAGAGCTCCCTTCACTCCAATATTCTTCAGATACTCAAGCGGGGGGTGGTGGTAGCTGGTGTGACCCACCATCTTCCCCGCTGCCTTCGCTTGAGTCTGTTGATACTCTTATCCGATCCCCTCCATCAAATGATGGGCCCACACAGCAGCAGCAGCCAGATGACTCGCTCTCACCAAGGAACAATGGGCTTTTGGAATCTGTATTATATGAATCACATACTAAGAAAAAGTCCAAGAAAAATTCATGGCATCGTCATCAGTATTCTTCTGATGGCGGATCTGTTGCAGCAGCTGGTGGTGGTTTTGTGGTGGATGGTGGTGGTTTGACTACTCAGCTCCGTGATGCAGAATGGGGGGAAATGTATGGTGGTGATCCAAACTCTCCTTTAGGCCATTCTGCTATATCGGTGTTCAGTGAATATACTACGCCTGTTAGCGGAAGCTCATTTGACGATCCTGACTTAGTCGAGACTGTGCAAGAGTGGAATCCAAAGCAATATAACAGAAACAGCGATATTTCAAATCAAATGAAATTTTCAAGGCCGGATTTCCTACTGGGATCGAATTGGTTTGGTCCAGAAACTGAGCAAGGAAAACACCATTCCACCCTTACAGATGCAATTGGGCAACTTCTTGGCGAAGACTGCAACTTCAAGTATTCTTCTGCTGCGGCTTCTTCGCCTGGTCAAGGTGGTCATAGCTCTTGCGAATGGGAATAACTTCGGTTTTCTCTGTTAGGGTTTTGATTACTTCTTTCATTTTATTTTCTCTATATTGTAATTTCGGATCATTTTTGGCCGAGAGGACCGCTGCGAAAGTATTGTAGAAGTATATTGACAGGAATATCTGCAGGTTTTTTGTCTTTACTTTTTCTTGGTGGGTTCTTTTTTGTTGGTTGTGTGGGGTTTATATACATGGTTTCAATTTGTCA

Network for GWHGAAZE008567

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	39	86	6.90E-15
PF00249.32	Myb_DNA-binding	92	135	1.50E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.042
	SRR3591706	second leaf	2.725
	SRR3591707	mature leaf	2.740
	SRR3591708	Shoot apex	4.803
	SRR3591709	Stem	5.824
	SRR3591710	White floral bud	7.177
	SRR3591711	White flower	7.854
	SRR3591712	Green floral bud	8.414
	SRR3591713	Yellow flower	8.922
SRP173429	SRR8316895	Juvenile bud stage	7.642
	SRR8316896	Juvenile bud stage	13.065
	SRR8316897	Juvenile bud stage	4.813
	SRR8316894	Third green stage	3.671
	SRR8316900	Third green stage	7.082
	SRR8316901	Third green stage	7.211
	SRR8316898	Complete white stage	1.792
	SRR8316899	Complete white stage	5.720
	SRR8316903	Complete white stage	2.485
	SRR8316902	Silver flowering stage	1.846
	SRR8316904	Silver flowering stage	2.545
	SRR8316905	Silver flowering stage	1.088
	SRR8316906	Gold flowering stage	3.052
	SRR8316907	Gold flowering stage	2.939
	SRR8316908	Gold flowering stage	2.623
SRP132670	SRR6706286	Control	8.185
	SRR6706287	Light intensity 50%	6.406
	SRR6706288	Light intensity 20%	7.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.371
	CNS0095593	Slightly white alabastrum(diploid) 2	5.338
	CNS0095594	Slightly white alabastrum(diploid) 3	9.708
	CNS0095595	Whole white alabastrum(diploid) 2	3.902
	CNS0095596	Whole white alabastrum(diploid) 3	4.237
	CNS0095597	Whole white alabastrum(diploid) 4	3.987
	CNS0095598	Silvery flower (diploied) 1	3.138
	CNS0095599	Silvery flower (diploied) 2	2.794
	CNS0095600	Silvery flower (diploied) 3	4.129
	CNS0095601	Golden flower (diploid) 1	1.760
	CNS0095602	Golden flower (diploid) 2	3.348
	CNS0095603	Golden flower (diploid) 3	3.653
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.537
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.870
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.011
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.023
	CNS0095610	Silvery flower (tetraploid) 1	3.444
	CNS0095611	Silvery flower (tetraploid) 2	2.978
	CNS0095612	Silvery flower (tetraploid) 3	3.488
	CNS0095613	Golden flower (tetraploid) 1	2.530
	CNS0095614	Golden flower (tetraploid) 2	2.629
	CNS0095615	Golden flower (tetraploid) 3	3.155
CRA001975	CRR073297	Stem 1	10.101
	CRR073298	Stem 2	7.899
	CRR073299	Stem 3	11.641
	CRR073300	Leaf 1	3.777
	CRR073301	Leaf 2	4.103
	CRR073302	Leaf 3	3.486
	CRR073303	Juvenile bud 1	1.284
	CRR073304	Juvenile bud 2	0.875
	CRR073305	Juvenile bud 3	1.081
	CRR073306	Third green 1	0.426
	CRR073307	Third green 2	0.680
	CRR073308	Third green 3	0.682
	CRR073309	Second white 1	0.173
	CRR073310	Second white 2	0.583
	CRR073311	Second white 3	0.558
	CRR073312	Silver flowering 1	0.557
	CRR073313	Silver flowering 2	0.305
	CRR073314	Silver flowering 3	0.199
	CRR073315	Gold flowering 1	1.100
	CRR073316	Gold flowering 2	2.251
	CRR073317	Gold flowering 3	0.089
	CRR073318	Tawny withering 1	1.939
	CRR073319	Tawny withering 2	2.869
	CRR073320	Tawny withering 3	2.331