Gene detail

Detail information of GWHGAAZE008570

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010681144.1	2.07614E-71	PREDICTED: replication factor C subunit 1 [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9C587\|RFC1_ARATH	8E-67	Replication factor C subunit 1
trEMBL	tr\|A0A061FPV6\|A0A061FPV6_THECC	4E-70	Replication factor C subunit 1 {ECO:0000313\|EMBL:EOY19345.1}
TAIR10	AT5G22010.1	1E-58	replication factor C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	83150156	83151588	+
GWHAAZE00000002	mRNA	83150156	83151588	+
GWHAAZE00000002	exon	83150156	83150434	+
GWHAAZE00000002	exon	83150848	83150915	+
GWHAAZE00000002	exon	83151111	83151186	+
GWHAAZE00000002	exon	83151265	83151326	+
GWHAAZE00000002	exon	83151426	83151588	+
GWHAAZE00000002	CDS	83150156	83150434	+
GWHAAZE00000002	CDS	83150848	83150915	+
GWHAAZE00000002	CDS	83151111	83151186	+
GWHAAZE00000002	CDS	83151265	83151326	+
GWHAAZE00000002	CDS	83151426	83151588	+

Transcript Sequence
>GWHTAAZE008578 ATGAAAGTGATGAAGATGACGCAGATGGTGCTAACACCAAGTCTTCTCTCAAATCTGCTGGAAGAGGTCGTGGTGGAAAAAGTGCAGCTTCATTCTGCTGTTGGCATGAATATTGATGAAGATGAAGCCGATAAGAAGCCTCTTAAATCCAGTGGACGGGGTCGTGGTGGAAGAGGTGGTGCATCGGCAGCACCAGCTGGAGGCAGAGGAGGTGGTGGTGGACGGGGTGGATTCATGAACTTTGGTGAAAGGAAAGATCCTCCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTAGTCCTGATTGTTTAGCTGGTTTGACCTTTGTAATTAGTGGAACACTTGATAGTTTGGAAAGAGAAGAAGCTGAGGATTTGATTAAGCGCCATGGAGGTCGTGTTACTGGATCTGTCAGCAAAAAAACGAATTATCTCTTATGCGATGAAGATATTGGGGGACGAAAATCAGAGAAAGCTAGAGAGCTTGGCACTGCCTTTCTTACTGAGGATGGGTTATTTGATAAAATCCGTGCATCAAATAAATCAAAAGTCACTGCTCGAGAGGAATCAAAAAAACCTATGGATAAGGTTGTTGCACCTCTGCCAAAGAAAAGCCCTCAGAAAATTGAAACAAAGAGTACACCAACATAA

Network for GWHGAAZE008570

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00533.27	BRCT	100	173	5.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10754	RFC1	DNA replication	map03030
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.100
	SRR3591706	second leaf	18.031
	SRR3591707	mature leaf	16.281
	SRR3591708	Shoot apex	28.562
	SRR3591709	Stem	25.294
	SRR3591710	White floral bud	27.032
	SRR3591711	White flower	31.094
	SRR3591712	Green floral bud	23.748
	SRR3591713	Yellow flower	23.694
SRP173429	SRR8316895	Juvenile bud stage	17.987
	SRR8316896	Juvenile bud stage	21.275
	SRR8316897	Juvenile bud stage	8.467
	SRR8316894	Third green stage	10.844
	SRR8316900	Third green stage	21.601
	SRR8316901	Third green stage	19.625
	SRR8316898	Complete white stage	6.822
	SRR8316899	Complete white stage	24.100
	SRR8316903	Complete white stage	19.703
	SRR8316902	Silver flowering stage	8.581
	SRR8316904	Silver flowering stage	14.986
	SRR8316905	Silver flowering stage	6.275
	SRR8316906	Gold flowering stage	22.189
	SRR8316907	Gold flowering stage	21.493
	SRR8316908	Gold flowering stage	20.212
SRP132670	SRR6706286	Control	12.611
	SRR6706287	Light intensity 50%	13.367
	SRR6706288	Light intensity 20%	13.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.442
	CNS0095593	Slightly white alabastrum(diploid) 2	5.744
	CNS0095594	Slightly white alabastrum(diploid) 3	8.800
	CNS0095595	Whole white alabastrum(diploid) 2	8.719
	CNS0095596	Whole white alabastrum(diploid) 3	4.053
	CNS0095597	Whole white alabastrum(diploid) 4	6.754
	CNS0095598	Silvery flower (diploied) 1	22.061
	CNS0095599	Silvery flower (diploied) 2	12.037
	CNS0095600	Silvery flower (diploied) 3	19.518
	CNS0095601	Golden flower (diploid) 1	13.103
	CNS0095602	Golden flower (diploid) 2	23.188
	CNS0095603	Golden flower (diploid) 3	23.621
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.854
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.710
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.649
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.968
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.738
	CNS0095610	Silvery flower (tetraploid) 1	23.021
	CNS0095611	Silvery flower (tetraploid) 2	23.233
	CNS0095612	Silvery flower (tetraploid) 3	16.178
	CNS0095613	Golden flower (tetraploid) 1	7.110
	CNS0095614	Golden flower (tetraploid) 2	19.201
	CNS0095615	Golden flower (tetraploid) 3	20.328
CRA001975	CRR073297	Stem 1	16.186
	CRR073298	Stem 2	15.380
	CRR073299	Stem 3	12.668
	CRR073300	Leaf 1	13.172
	CRR073301	Leaf 2	11.046
	CRR073302	Leaf 3	7.414
	CRR073303	Juvenile bud 1	6.401
	CRR073304	Juvenile bud 2	6.465
	CRR073305	Juvenile bud 3	14.053
	CRR073306	Third green 1	3.006
	CRR073307	Third green 2	1.895
	CRR073308	Third green 3	2.799
	CRR073309	Second white 1	3.788
	CRR073310	Second white 2	5.741
	CRR073311	Second white 3	4.681
	CRR073312	Silver flowering 1	5.799
	CRR073313	Silver flowering 2	5.559
	CRR073314	Silver flowering 3	3.462
	CRR073315	Gold flowering 1	1.324
	CRR073316	Gold flowering 2	4.838
	CRR073317	Gold flowering 3	1.923
	CRR073318	Tawny withering 1	7.281
	CRR073319	Tawny withering 2	6.092
	CRR073320	Tawny withering 3	7.811