Detail information of GWHGAAZE008583


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007048329.13.6811E-167Ribosomal protein S5/Elongation factor G/III/V family protein [Theobroma cacao]
Swissprottr|O23755|EF2_BETVU3E-29Elongation factor 2
trEMBLtr|A0A061DKB2|A0A061DKB2_THECC1E-167Ribosomal protein S5/Elongation factor G/III/V family protein {ECO:0000313|EMBL:EOX92486.1}
TAIR10AT3G22980.13E-119Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8358929783590283-
GWHAAZE00000002mRNA8358929783590283-
GWHAAZE00000002exon8358929783590283-
GWHAAZE00000002CDS8358929783590283-
Transcript Sequence

Network for GWHGAAZE008583

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00679.25EFG_C1872711.50E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14536RIA1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.066
SRR3591706second leaf8.686
SRR3591707mature leaf13.246
SRR3591708Shoot apex15.741
SRR3591709Stem16.923
SRR3591710White floral bud19.321
SRR3591711White flower26.268
SRR3591712Green floral bud37.236
SRR3591713Yellow flower22.325
SRP173429 SRR8316895Juvenile bud stage 17.507
SRR8316896Juvenile bud stage 24.917
SRR8316897Juvenile bud stage 6.011
SRR8316894Third green stage 13.079
SRR8316900Third green stage 47.922
SRR8316901Third green stage 45.912
SRR8316898Complete white stage 10.810
SRR8316899Complete white stage 36.047
SRR8316903Complete white stage 19.368
SRR8316902Silver flowering stage9.980
SRR8316904Silver flowering stage13.392
SRR8316905Silver flowering stage5.919
SRR8316906Gold flowering stage 21.069
SRR8316907Gold flowering stage 19.869
SRR8316908Gold flowering stage 23.576
SRP132670SRR6706286Control45.045
SRR6706287Light intensity 50%48.194
SRR6706288Light intensity 20%49.604
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.272
CNS0095593Slightly white alabastrum(diploid) 235.369
CNS0095594Slightly white alabastrum(diploid) 327.511
CNS0095595Whole white alabastrum(diploid) 228.912
CNS0095596Whole white alabastrum(diploid) 333.534
CNS0095597Whole white alabastrum(diploid) 420.832
CNS0095598Silvery flower (diploied) 124.140
CNS0095599Silvery flower (diploied) 219.096
CNS0095600Silvery flower (diploied) 333.926
CNS0095601Golden flower (diploid) 121.456
CNS0095602Golden flower (diploid) 229.594
CNS0095603Golden flower (diploid) 327.443
CNS0095604Slightly white alabastrum(tetraploid) 123.969
CNS0095605Slightly white alabastrum(tetraploid) 222.185
CNS0095606Slightly white alabastrum(tetraploid) 328.764
CNS0095607Whole white alabastrum(tetraploid) 113.684
CNS0095608Whole white alabastrum(tetraploid) 216.404
CNS0095609Whole white alabastrum(tetraploid) 330.650
CNS0095610Silvery flower (tetraploid) 130.137
CNS0095611Silvery flower (tetraploid) 227.811
CNS0095612Silvery flower (tetraploid) 325.071
CNS0095613Golden flower (tetraploid) 117.568
CNS0095614Golden flower (tetraploid) 224.552
CNS0095615Golden flower (tetraploid) 322.706
CRA001975CRR073297Stem 144.231
CRR073298Stem 247.354
CRR073299Stem 351.374
CRR073300Leaf 148.645
CRR073301Leaf 250.151
CRR073302Leaf 344.180
CRR073303Juvenile bud 145.743
CRR073304Juvenile bud 245.385
CRR073305Juvenile bud 359.197
CRR073306Third green 127.422
CRR073307Third green 222.774
CRR073308Third green 326.322
CRR073309Second white 132.291
CRR073310Second white 232.598
CRR073311Second white 325.784
CRR073312Silver flowering 125.948
CRR073313Silver flowering 229.608
CRR073314Silver flowering 321.957
CRR073315Gold flowering 120.008
CRR073316Gold flowering 219.730
CRR073317Gold flowering 321.782
CRR073318Tawny withering 135.392
CRR073319Tawny withering 232.667
CRR073320Tawny withering 333.572