Detail information of GWHGAAZE008584


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007048329.10Ribosomal protein S5/Elongation factor G/III/V family protein [Theobroma cacao]
Swissprottr|P28996|EF2_PARKE1E-94Elongation factor 2
trEMBLtr|A0A061DKB2|A0A061DKB2_THECC0Ribosomal protein S5/Elongation factor G/III/V family protein {ECO:0000313|EMBL:EOX92486.1}
TAIR10AT3G22980.10Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8359055383592328-
GWHAAZE00000002mRNA8359055383592328-
GWHAAZE00000002exon8359055383592328-
GWHAAZE00000002CDS8359055383592328-
Transcript Sequence

Network for GWHGAAZE008584

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU93492.00E-53
PF03144.26GTP_EFTU_D24385163.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14536RIA1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.018
SRR3591706second leaf5.028
SRR3591707mature leaf8.430
SRR3591708Shoot apex6.067
SRR3591709Stem7.696
SRR3591710White floral bud9.203
SRR3591711White flower12.978
SRR3591712Green floral bud12.339
SRR3591713Yellow flower9.355
SRP173429 SRR8316895Juvenile bud stage 6.277
SRR8316896Juvenile bud stage 9.160
SRR8316897Juvenile bud stage 2.552
SRR8316894Third green stage 5.394
SRR8316900Third green stage 18.354
SRR8316901Third green stage 16.113
SRR8316898Complete white stage 4.489
SRR8316899Complete white stage 14.554
SRR8316903Complete white stage 9.533
SRR8316902Silver flowering stage4.008
SRR8316904Silver flowering stage7.883
SRR8316905Silver flowering stage3.589
SRR8316906Gold flowering stage 10.459
SRR8316907Gold flowering stage 10.311
SRR8316908Gold flowering stage 10.378
SRP132670SRR6706286Control30.371
SRR6706287Light intensity 50%29.350
SRR6706288Light intensity 20%30.613
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.819
CNS0095593Slightly white alabastrum(diploid) 24.115
CNS0095594Slightly white alabastrum(diploid) 35.250
CNS0095595Whole white alabastrum(diploid) 25.713
CNS0095596Whole white alabastrum(diploid) 35.488
CNS0095597Whole white alabastrum(diploid) 44.550
CNS0095598Silvery flower (diploied) 17.048
CNS0095599Silvery flower (diploied) 23.401
CNS0095600Silvery flower (diploied) 319.959
CNS0095601Golden flower (diploid) 15.066
CNS0095602Golden flower (diploid) 215.557
CNS0095603Golden flower (diploid) 315.670
CNS0095604Slightly white alabastrum(tetraploid) 15.263
CNS0095605Slightly white alabastrum(tetraploid) 24.190
CNS0095606Slightly white alabastrum(tetraploid) 317.740
CNS0095607Whole white alabastrum(tetraploid) 13.523
CNS0095608Whole white alabastrum(tetraploid) 23.016
CNS0095609Whole white alabastrum(tetraploid) 317.925
CNS0095610Silvery flower (tetraploid) 118.124
CNS0095611Silvery flower (tetraploid) 214.928
CNS0095612Silvery flower (tetraploid) 312.432
CNS0095613Golden flower (tetraploid) 15.105
CNS0095614Golden flower (tetraploid) 212.208
CNS0095615Golden flower (tetraploid) 312.515
CRA001975CRR073297Stem 111.436
CRR073298Stem 210.309
CRR073299Stem 314.196
CRR073300Leaf 112.204
CRR073301Leaf 211.393
CRR073302Leaf 313.058
CRR073303Juvenile bud 110.145
CRR073304Juvenile bud 212.575
CRR073305Juvenile bud 313.760
CRR073306Third green 18.803
CRR073307Third green 25.938
CRR073308Third green 38.732
CRR073309Second white 19.727
CRR073310Second white 29.618
CRR073311Second white 38.419
CRR073312Silver flowering 17.357
CRR073313Silver flowering 27.298
CRR073314Silver flowering 35.347
CRR073315Gold flowering 13.337
CRR073316Gold flowering 24.866
CRR073317Gold flowering 35.716
CRR073318Tawny withering 16.495
CRR073319Tawny withering 23.944
CRR073320Tawny withering 34.868