Detail information of GWHGAAZE008585


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007048329.10Ribosomal protein S5/Elongation factor G/III/V family protein [Theobroma cacao]
Swissprottr|P28996|EF2_PARKE6E-76Elongation factor 2
trEMBLtr|A0A061DKB2|A0A061DKB2_THECC0Ribosomal protein S5/Elongation factor G/III/V family protein {ECO:0000313|EMBL:EOX92486.1}
TAIR10AT3G22980.10Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8369551483698540-
GWHAAZE00000002mRNA8369551483698540-
GWHAAZE00000002exon8369840983698540-
GWHAAZE00000002exon8369776183698225-
GWHAAZE00000002exon8369632283697684-
GWHAAZE00000002exon8369596683696189-
GWHAAZE00000002exon8369551483695876-
GWHAAZE00000002CDS8369840983698540-
GWHAAZE00000002CDS8369776183698225-
GWHAAZE00000002CDS8369632283697684-
GWHAAZE00000002CDS8369596683696189-
GWHAAZE00000002CDS8369551483695876-
Transcript Sequence

Network for GWHGAAZE008585

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU9355.30E-08
PF00009.28GTP_EFTU582621.40E-07
PF03144.26GTP_EFTU_D23514295.70E-08
PF14492.7EFG_III4475142.70E-06
PF00679.25EFG_C7377913.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14536RIA1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.523
SRR3591706second leaf5.176
SRR3591707mature leaf7.144
SRR3591708Shoot apex6.535
SRR3591709Stem7.579
SRR3591710White floral bud9.087
SRR3591711White flower11.325
SRR3591712Green floral bud13.818
SRR3591713Yellow flower9.784
SRP173429 SRR8316895Juvenile bud stage 6.140
SRR8316896Juvenile bud stage 9.415
SRR8316897Juvenile bud stage 2.660
SRR8316894Third green stage 5.065
SRR8316900Third green stage 17.888
SRR8316901Third green stage 16.434
SRR8316898Complete white stage 4.372
SRR8316899Complete white stage 12.579
SRR8316903Complete white stage 7.088
SRR8316902Silver flowering stage3.663
SRR8316904Silver flowering stage5.295
SRR8316905Silver flowering stage3.025
SRR8316906Gold flowering stage 8.783
SRR8316907Gold flowering stage 8.416
SRR8316908Gold flowering stage 8.137
SRP132670SRR6706286Control17.589
SRR6706287Light intensity 50%18.674
SRR6706288Light intensity 20%19.552
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.547
CNS0095593Slightly white alabastrum(diploid) 28.465
CNS0095594Slightly white alabastrum(diploid) 37.648
CNS0095595Whole white alabastrum(diploid) 27.138
CNS0095596Whole white alabastrum(diploid) 39.969
CNS0095597Whole white alabastrum(diploid) 46.069
CNS0095598Silvery flower (diploied) 16.965
CNS0095599Silvery flower (diploied) 26.138
CNS0095600Silvery flower (diploied) 314.503
CNS0095601Golden flower (diploid) 16.035
CNS0095602Golden flower (diploid) 211.685
CNS0095603Golden flower (diploid) 311.795
CNS0095604Slightly white alabastrum(tetraploid) 16.566
CNS0095605Slightly white alabastrum(tetraploid) 26.332
CNS0095606Slightly white alabastrum(tetraploid) 314.282
CNS0095607Whole white alabastrum(tetraploid) 14.304
CNS0095608Whole white alabastrum(tetraploid) 24.158
CNS0095609Whole white alabastrum(tetraploid) 314.203
CNS0095610Silvery flower (tetraploid) 112.988
CNS0095611Silvery flower (tetraploid) 210.555
CNS0095612Silvery flower (tetraploid) 39.874
CNS0095613Golden flower (tetraploid) 16.352
CNS0095614Golden flower (tetraploid) 210.153
CNS0095615Golden flower (tetraploid) 310.096
CRA001975CRR073297Stem 112.089
CRR073298Stem 212.091
CRR073299Stem 313.535
CRR073300Leaf 114.511
CRR073301Leaf 212.792
CRR073302Leaf 311.989
CRR073303Juvenile bud 112.273
CRR073304Juvenile bud 212.946
CRR073305Juvenile bud 316.574
CRR073306Third green 18.575
CRR073307Third green 26.510
CRR073308Third green 38.893
CRR073309Second white 18.738
CRR073310Second white 29.132
CRR073311Second white 37.080
CRR073312Silver flowering 17.427
CRR073313Silver flowering 29.547
CRR073314Silver flowering 37.296
CRR073315Gold flowering 15.185
CRR073316Gold flowering 26.085
CRR073317Gold flowering 37.322
CRR073318Tawny withering 18.639
CRR073319Tawny withering 27.062
CRR073320Tawny withering 36.997