Gene detail

Detail information of GWHGAAZE008619

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010254292.1	PREDICTED: structural maintenance of chromosomes protein 3 [Nelumbo nucifera]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	Structural maintenance of chromosomes protein 3
trEMBL	tr\|F6H9I4\|F6H9I4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48877.1}
TAIR10	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	85278361	85308924	+
GWHAAZE00000002	mRNA	85278361	85308924	+
GWHAAZE00000002	exon	85278361	85278375	+
GWHAAZE00000002	exon	85278471	85278546	+
GWHAAZE00000002	exon	85280765	85280803	+
GWHAAZE00000002	exon	85280924	85280991	+
GWHAAZE00000002	exon	85281100	85281171	+
GWHAAZE00000002	exon	85281820	85281899	+
GWHAAZE00000002	exon	85282311	85282389	+
GWHAAZE00000002	exon	85282710	85282827	+
GWHAAZE00000002	exon	85282904	85283079	+
GWHAAZE00000002	exon	85285488	85285733	+
GWHAAZE00000002	exon	85285967	85286088	+
GWHAAZE00000002	exon	85286295	85286439	+
GWHAAZE00000002	exon	85289370	85289542	+
GWHAAZE00000002	exon	85289682	85289781	+
GWHAAZE00000002	exon	85291625	85291773	+
GWHAAZE00000002	exon	85292235	85292433	+
GWHAAZE00000002	exon	85301774	85301861	+
GWHAAZE00000002	exon	85301947	85302077	+
GWHAAZE00000002	exon	85303473	85303622	+
GWHAAZE00000002	exon	85304053	85304236	+
GWHAAZE00000002	exon	85304598	85304671	+
GWHAAZE00000002	exon	85304741	85304892	+
GWHAAZE00000002	exon	85306228	85306396	+
GWHAAZE00000002	exon	85306705	85306851	+
GWHAAZE00000002	exon	85307269	85307352	+
GWHAAZE00000002	exon	85307498	85307672	+
GWHAAZE00000002	exon	85308734	85308924	+
GWHAAZE00000002	CDS	85278361	85278375	+
GWHAAZE00000002	CDS	85278471	85278546	+
GWHAAZE00000002	CDS	85280765	85280803	+
GWHAAZE00000002	CDS	85280924	85280991	+
GWHAAZE00000002	CDS	85281100	85281171	+
GWHAAZE00000002	CDS	85281820	85281899	+
GWHAAZE00000002	CDS	85282311	85282389	+
GWHAAZE00000002	CDS	85282710	85282827	+
GWHAAZE00000002	CDS	85282904	85283079	+
GWHAAZE00000002	CDS	85285488	85285733	+
GWHAAZE00000002	CDS	85285967	85286088	+
GWHAAZE00000002	CDS	85286295	85286439	+
GWHAAZE00000002	CDS	85289370	85289542	+
GWHAAZE00000002	CDS	85289682	85289781	+
GWHAAZE00000002	CDS	85291625	85291773	+
GWHAAZE00000002	CDS	85292235	85292433	+
GWHAAZE00000002	CDS	85301774	85301861	+
GWHAAZE00000002	CDS	85301947	85302077	+
GWHAAZE00000002	CDS	85303473	85303622	+
GWHAAZE00000002	CDS	85304053	85304236	+
GWHAAZE00000002	CDS	85304598	85304671	+
GWHAAZE00000002	CDS	85304741	85304892	+
GWHAAZE00000002	CDS	85306228	85306396	+
GWHAAZE00000002	CDS	85306705	85306851	+
GWHAAZE00000002	CDS	85307269	85307352	+
GWHAAZE00000002	CDS	85307498	85307672	+
GWHAAZE00000002	CDS	85308734	85308924	+

Transcript Sequence
>GWHTAAZE008629 ATGTATATAAAACAGGTTATTATTGAGGGGTTTAAGAGCTACAAAGAACAAGTTGCTACTGAGCCTTTCAGTCCAAAAGTAAATTGCGTTGTTGGTGCTAATGGATCTGGCAAATCGAACTTTTTCCAAGCTATCCGTTTTGTGATAAGTGACCTCTTCCAACAACTGCGCACTGAAGACAGGCATAAACTCCTACATGAAGGTGCAGGACGCCAATTGCTAACTGCTTTTGTGGAGATTGTGTTTGACAACTCTGAACAACGCATCCCTATTGCTAAGGAGGAATTGCGCTTGCGGAGAACAATTAGTCTTAAAAGGGATGAATATTTCTTGGATGGAAGGCAAATCAGCAAAATTGAAGTTATGGATTTACTGGAGAGTGCTGGGTTCTCTCGCTCCAATCCTTACTACGTTGTGCAACAGGGGAAAATAATGCAATTAACAATGATGGAAGATCAACAAAGACTGGAACTACTGAAGGAAATTGGTGGTTCGCGCATTTATGAAGAGAGACGAAAAGAAAGTTTGAAAATTATGCAAGAAAGTGGTAAGAAGAGAAACCAGATAATTCAAATTGTTCAGTACTTGGACGAGAGATTAAGAGAGCTGGATGAAGAGAGAGCAGAGCTGAAAAACTTTCAGCAAATTGACAATAAGAGGAAATACTTACAATACACGATATATAACAAAGAACTTCATGTTGCACGACAGAAACTAGTGGAGGTAGAAGTGGCTCGGAACAATGTTTCCGAAAAATCAACTGAGAGGAATAAAAATTTGTCAGACGTGGTAGAAGAGTTGAACGAGTTGGACAAGTCAGCTAAAGATTTGACAAGAGAAGTTCAAAGTTTAATTAGAGAGAAAGAAGCATTAGAGAAGCAACAGGTCGATGCTATTCAAATGCGTGCTCAGCTTGAGCTTGATGAAAAAGACATTCAAGAAAAGATCACTGGAATTATTAAAGCCAAGCAAGATGCAACAAAAGAGGTTGAGCTTCTCCGCAGAGAAATCGAGGAATCCACAGATGAGCTCAACAAAATCAAGCCATTGTACCACAAGCAAGTCAGAGAGGAAGAGGACATTACACGAGGGATAATGGAGCGTGAAAATCATCTCAACATTCTTTATCAGAAACAAGGTCGTACAACTGAGTTTTCTAGTAAAGCCGCTCGTGACAAGTGGCTTCAAGATGTAATTGACGAGTACGAACGAGCATTGTCTTCAAATCAAATGCAGGAGAAAAAACTCAATGATGAAATTGATCAGCTTAAAACCGAGCTGGATAAGGCGGAAACACGCATTAAAGGTTTTGAAACTGAAATAGCAGCATTACAATCCGTTATATCTCAGAATCGTGGCAGTTACAATCAGTTTAGGTCACAGAGGGACAAACTGAACGATGAGCGGAAGTATTTGTGGTGGAAAGAAAATGATCTAGCTAATGAAATTGATCTGCTTAAAACAGAAGTTACAAACGTGCAGAGAAACCTACAGTTCTCGATTCCTCGTGATATTAGGAGAGGGATGAGTTTTCTTAAAAGGACACACAGGCAGCAGTCAATGGGAAAAAGAATTAAAGAAGAATATTTCTCGATTTTTGACTTGCTCGATTGTGAGGAAAAGTATTTTACGGCTGTTGAAATTGCTGCAGGAAACAGCTTATTTCATTTGGTGGTTGAAAATGATGAGACATCAACACAGATGATTGAAGACCTTGGTAAAGAAAACGGAAGAGTTACATTTATTCCATTGAATATGGTACAGGCCCAACAAGTTACCTATCCAGAAAGTTCTGATGTGATACCTGTTCTGAAGAAATTGAGATTCCCTCACAAATATACTCCGGCTTTTATGGAGGTGTTTGCTAGAACAGTAATTTGCCGAAATCTGGATGTGGCTACGGACGTTGCACGCACTTGGGACCTAGACTGCATAACATTGGAAGGTGACAAAGTGAGCCATAATGGTTGGATGACAGGAGGATTTTATGATTATAGGCATTCAAAACTGAAGTTAAGGAACACTATTAAACAGAATACGGAGTCCATTGATGAGAAGAAAATTGAATTGGAGAAAATAGACCAGAAAATTAGTGAACTTGTTGGTGAGCAACAGAAAGCTGATGCCAAGTTGGCGTATGACAAATCAGCGTTGGAACAGCTTAAACGGGATAATGCTAATGCTAAAAATCAGCAGCACTCCATTTCCAAAGTCATTGAGAAGAAGAATGAGACCAGAAAAGCCGAGCTTGAGACCAATCTCTTAACAAACCTGGCAAAAAGGATACAAGAATTGGAGGCAATCAAATCTTCAGAAGAGGCAAAAATGTTACATAGTGAAGCTGAACTAAAAAGGCAAGAACTAAGGGTCACTGAGTTGCTAGCTGAAGATGTGACACGCCATCTCAAAAGAGTTTCTGAAAGCATAGAGGAACAAACCAGGAAGCTTCAAGAGATCAAAGAAAAAAGAAATGAGTTAAAGGTGAACAGTGAAGATAACTATCAAAGGGCAGTCGAAGATAATAACAAAGACCTCGAACAACTATTAACTACAAGAAATATTCTCGTCGCCAAAGAAGAACAGTACTCGAAGAAAATCAGGGAATTGGGTCCATTGTCTTTTGATTCCTTGGACGGGTATAAGAGGAAGAGCGTAAAAGACTTGTATGAAATGCTTCACAATTGCAATGAGCAACTGGAACAATTCAGCCATGTAAACAAAAAAGCACTTGATCAGTATGCAAATTTTGCAGAGCAGCGAGAAGAATTCCAGAAAAGGAAGGAGGAATTAATCGCTGGTGATGAGAAAATCAAAGAACTTATATCTGTGCTGGATCAACAGAAAGATGAATCAATAGAGCGTACCTTCAAAGGTGTTGCCAAGCATTTTCGAGAAGCTTTTTCGGAACTTGTCCAAGGCGGTCATGGAACGTTAGTAATGACAAAGAAAAAGGATGGTGATCAAGATTCTGATGACAACGACCAGTCTCTTGCACCTCGTGTGGAAGGAAGGGTTGAGAAATACGTTGGAGTGAAAGTCTCTTTTACTGGGCAAGGGGAAACACAGTCAATGAAGCAGCTGTCCGGAGGTCAGAAAACTGTGGTTGCACTAGCACTCATCTTCGCCATACAGAGATGTGATCCTGCTCCATTTTATCTGTTTGATGAGATAGATGCTGCGCTCGATCCTCAGTATAGAACCGCTGTTGCAAATATGATTGAGCGTTTGGCAAACACAACCGGTTCGCAGTTTATAGCAACAACATTCCGGCAAGAGCTTGTAAATGTTGCTGACAAGATATACGGGGTTACTCACACAAACCGGGTTAGCCGCGTCGGCCTTGTCACCAAGGCACAAGCAGTAAATTTTGTTGAGAATGACCACTCCCACAATGTTGAATGA

Network for GWHGAAZE008619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	2	1108	7.40E-52
PF06470.14	SMC_hinge	532	636	2.10E-22

Protein Sequence

>GWHPAAZE008624
MYIKQVIIEGFKSYKEQVATEPFSPKVNCVVGANGSGKSNFFQAIRFVISDLFQQLRTEDRHKLLHEGAGRQLLTAFVEIVFDNSEQRIPIAKEELRLRRTISLKRDEYFLDGRQISKIEVMDLLESAGFSRSNPYYVVQQGKIMQLTMMEDQQRLELLKEIGGSRIYEERRKESLKIMQESGKKRNQIIQIVQYLDERLRELDEERAELKNFQQIDNKRKYLQYTIYNKELHVARQKLVEVEVARNNVSEKSTERNKNLSDVVEELNELDKSAKDLTREVQSLIREKEALEKQQVDAIQMRAQLELDEKDIQEKITGIIKAKQDATKEVELLRREIEESTDELNKIKPLYHKQVREEEDITRGIMERENHLNILYQKQGRTTEFSSKAARDKWLQDVIDEYERALSSNQMQEKKLNDEIDQLKTELDKAETRIKGFETEIAALQSVISQNRGSYNQFRSQRDKLNDERKYLWWKENDLANEIDLLKTEVTNVQRNLQFSIPRDIRRGMSFLKRTHRQQSMGKRIKEEYFSIFDLLDCEEKYFTAVEIAAGNSLFHLVVENDETSTQMIEDLGKENGRVTFIPLNMVQAQQVTYPESSDVIPVLKKLRFPHKYTPAFMEVFARTVICRNLDVATDVARTWDLDCITLEGDKVSHNGWMTGGFYDYRHSKLKLRNTIKQNTESIDEKKIELEKIDQKISELVGEQQKADAKLAYDKSALEQLKRDNANAKNQQHSISKVIEKKNETRKAELETNLLTNLAKRIQELEAIKSSEEAKMLHSEAELKRQELRVTELLAEDVTRHLKRVSESIEEQTRKLQEIKEKRNELKVNSEDNYQRAVEDNNKDLEQLLTTRNILVAKEEQYSKKIRELGPLSFDSLDGYKRKSVKDLYEMLHNCNEQLEQFSHVNKKALDQYANFAEQREEFQKRKEELIAGDEKIKELISVLDQQKDESIERTFKGVAKHFREAFSELVQGGHGTLVMTKKKDGDQDSDDNDQSLAPRVEGRVEKYVGVKVSFTGQGETQSMKQLSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVANMIERLANTTGSQFIATTFRQELVNVADKIYGVTHTNRVSRVGLVTKAQAVNFVENDHSHNVE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.671
	SRR3591706	second leaf	0.512
	SRR3591707	mature leaf	0.674
	SRR3591708	Shoot apex	1.142
	SRR3591709	Stem	1.402
	SRR3591710	White floral bud	0.267
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	1.872
	SRR3591713	Yellow flower	0.023
SRP173429	SRR8316895	Juvenile bud stage	1.032
	SRR8316896	Juvenile bud stage	1.977
	SRR8316897	Juvenile bud stage	1.010
	SRR8316894	Third green stage	0.644
	SRR8316900	Third green stage	0.925
	SRR8316901	Third green stage	1.176
	SRR8316898	Complete white stage	0.400
	SRR8316899	Complete white stage	1.597
	SRR8316903	Complete white stage	0.564
	SRR8316902	Silver flowering stage	0.205
	SRR8316904	Silver flowering stage	0.213
	SRR8316905	Silver flowering stage	0.165
	SRR8316906	Gold flowering stage	0.316
	SRR8316907	Gold flowering stage	0.379
	SRR8316908	Gold flowering stage	0.402
SRP132670	SRR6706286	Control	0.948
	SRR6706287	Light intensity 50%	1.017
	SRR6706288	Light intensity 20%	1.006
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.939
	CNS0095593	Slightly white alabastrum(diploid) 2	0.772
	CNS0095594	Slightly white alabastrum(diploid) 3	1.018
	CNS0095595	Whole white alabastrum(diploid) 2	1.316
	CNS0095596	Whole white alabastrum(diploid) 3	1.332
	CNS0095597	Whole white alabastrum(diploid) 4	1.317
	CNS0095598	Silvery flower (diploied) 1	0.544
	CNS0095599	Silvery flower (diploied) 2	1.115
	CNS0095600	Silvery flower (diploied) 3	0.716
	CNS0095601	Golden flower (diploid) 1	0.995
	CNS0095602	Golden flower (diploid) 2	0.477
	CNS0095603	Golden flower (diploid) 3	0.449
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.123
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.585
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.323
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.704
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.078
	CNS0095610	Silvery flower (tetraploid) 1	0.195
	CNS0095611	Silvery flower (tetraploid) 2	0.065
	CNS0095612	Silvery flower (tetraploid) 3	0.583
	CNS0095613	Golden flower (tetraploid) 1	0.172
	CNS0095614	Golden flower (tetraploid) 2	0.235
	CNS0095615	Golden flower (tetraploid) 3	0.020
CRA001975	CRR073297	Stem 1	0.611
	CRR073298	Stem 2	0.626
	CRR073299	Stem 3	0.205
	CRR073300	Leaf 1	1.064
	CRR073301	Leaf 2	0.704
	CRR073302	Leaf 3	0.527
	CRR073303	Juvenile bud 1	0.293
	CRR073304	Juvenile bud 2	0.406
	CRR073305	Juvenile bud 3	0.124
	CRR073306	Third green 1	0.152
	CRR073307	Third green 2	0.018
	CRR073308	Third green 3	0.396
	CRR073309	Second white 1	0.070
	CRR073310	Second white 2	0.085
	CRR073311	Second white 3	0.088
	CRR073312	Silver flowering 1	0.043
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.109
	CRR073315	Gold flowering 1	0.016
	CRR073316	Gold flowering 2	0.186
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	0.409
	CRR073319	Tawny withering 2	0.236
	CRR073320	Tawny withering 3	0.597