Gene detail

Detail information of GWHGAAZE008638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15624.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	3E-39	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A068V529\|A0A068V529_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_101 {ECO:0000313\|EMBL:CDP15624.1}
TAIR10	AT5G20950.2	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	85850334	85857343	+
GWHAAZE00000002	mRNA	85850334	85857343	+
GWHAAZE00000002	exon	85850334	85850559	+
GWHAAZE00000002	exon	85851218	85851422	+
GWHAAZE00000002	exon	85852048	85852138	+
GWHAAZE00000002	exon	85852220	85852365	+
GWHAAZE00000002	exon	85854308	85854551	+
GWHAAZE00000002	exon	85854657	85854761	+
GWHAAZE00000002	exon	85855339	85855521	+
GWHAAZE00000002	exon	85855644	85855845	+
GWHAAZE00000002	exon	85856856	85857343	+
GWHAAZE00000002	CDS	85850334	85850559	+
GWHAAZE00000002	CDS	85851218	85851422	+
GWHAAZE00000002	CDS	85852048	85852138	+
GWHAAZE00000002	CDS	85852220	85852365	+
GWHAAZE00000002	CDS	85854308	85854551	+
GWHAAZE00000002	CDS	85854657	85854761	+
GWHAAZE00000002	CDS	85855339	85855521	+
GWHAAZE00000002	CDS	85855644	85855845	+
GWHAAZE00000002	CDS	85856856	85857343	+

Transcript Sequence
>GWHTAAZE008648 ATGGGGAAGCTTGAAATAGCAATGAGAGGGGTAGGGCTTGTGTTGTTATGCTTCTGGGTAGCTGTTTCAGAAGCAGAGTACATGAAATACAAAGACCCAAAACAGCCATTAAATACTAGAATCAAAGACCTGATGGGCCGAATGACCCTCGAAGAAAAGGTTGGCCAGATGACTCAGATCGAGCGGAAGCTTAGTTCGCGCGATGTGATGAAGAAGTACTTCATTGGGAGTGTATTGAGTGGAGGAGGGAGTGTACCGGCTCCAAAAGCATCTGCTGAAACTTGGATTAATATGGTGAATGATTTTCAAAAGGGTTCTCTTTCTACCCGTCTTGGGATTCCAATGATTTATGGAATTGATGCCATTCATGGCAACAACAATGTCTACAATGCAACGATTTTCCCTCACAACGTCGGGCTTGGAGTGACAAGGGATCCTGATCTTTTGAAGAGGATAGGGGTGGCAACTGCTCTTGAAGTTAGAGCTACAGGAATCCCTTATACTTTTGCTCCATGTATCGCGGTTTGTAGGGACCCGAGATGGGGCCGTTGCTATGAAAGCTATAGCGAAGATCATAAGATTGTTCAAGCACTGACCGAGATCATACCGGGCTTACAGGGAGATATGCCGGCCAACTCTCGAAAAGGCGTTCCCTTTGTTGGTGGAAAGACAAAAGTGGCAGCCTGTGCTAAGCACTTTGTGGGTGATGGTGGTACGGTTAATGGCATTGATGAGGACAACACGGTGATTGACTATAAAAAGTTGATGAGCATCCACATGCCTGCATACTTCAACTCCATTAGCAAGGGTGTTGCCACTGTAATGGTGTCCTACTCGAGCGTGAACGGGAAGAAGATGCATGCTAACCGTGATCTTGTCACAGGCTTTCTTAAGGGCAAACTCAAGTTTAGGGGTTTTGTTATATCAGATTGGCAAGGTATTGACAAGATCACTACCCCTCCCCATTCGAACTATTCTTATTCAGTTCAAGCTGGAATTGAAGCAGGGATAGACATGATCATGCTTCCCGAGAATTTCACCGAGTTCATTGATGATCTTATCTTCCAAGTGAAGAACAATATTATCCCTATGAGCAGGATTAACGATGCTGTTAAAAGGATCTTGAGGGTCAAGTTTGTCATGGGTCTCTTCGAGAATCCACTGGCCGACCTTAGCTTTGTCAAACATCTTGGAAGCCCGGAGCATAGGGAATTAGCAAGGGAAGCTGTGAGAAAATCTCTTGTTCTTCTGAAGAATGGTAAGATTGCTAATAAGCCATTGGTTCCTCTTCCCAAAAAAGCGGGGAAAATTCTTGTTGCTGGATCTAATGCCCATAACATGGGTAATCAATGTGGAGGATGGACAATCGAATGGCAAGGTCTTACTGGCGACATTACAGTTGGTACCACAATCTTAACCGCCATAAAAAACGCCGTCGATCCCTCAACACAAGTTGTCTTCAACGAGAATCCTGATGCCAATTTTGTGAAGTCCAACAAATTCTCTTACGCCATTGTCGTAGTGGGTGAACCCCCCTACTCTGAGATAAATGGCGACAGCACCAACTTAACCATACCTGAACCAGGCCCGACCACCATCACCAATGTTTGTGGAGCCATCAAGTGTGTGGTTGTCATAGTCTCGGGCCGACCCCTTGTGGTTGAGCCTTATGTTTCAAAAATCGATGCACTTGTTGCTGCTTGGCTCCCAGGAACAGAAGGCCAAGGTGTAGCCGATTTACTTTTCGGTGACTACGGGTTCACCGGGAAGCTAGCTCGGACTTGGTTCAAGTCGGTGGACCAGTTGCCAATGAATGTAGGTGATGCGCATTATGACCCTCTTTTTCCTTTTGGATTTGGTCTTACTACTAAACCTGTGAAGCAGAACTAA

Network for GWHGAAZE008638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	49	377	1.10E-71
PF01915.23	Glyco_hydro_3_C	414	622	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.084
	SRR3591706	second leaf	14.944
	SRR3591707	mature leaf	2.025
	SRR3591708	Shoot apex	33.103
	SRR3591709	Stem	9.143
	SRR3591710	White floral bud	3.956
	SRR3591711	White flower	2.240
	SRR3591712	Green floral bud	14.133
	SRR3591713	Yellow flower	0.537
SRP173429	SRR8316895	Juvenile bud stage	41.051
	SRR8316896	Juvenile bud stage	47.344
	SRR8316897	Juvenile bud stage	43.547
	SRR8316894	Third green stage	23.147
	SRR8316900	Third green stage	84.523
	SRR8316901	Third green stage	58.520
	SRR8316898	Complete white stage	10.018
	SRR8316899	Complete white stage	99.218
	SRR8316903	Complete white stage	14.016
	SRR8316902	Silver flowering stage	1.929
	SRR8316904	Silver flowering stage	3.524
	SRR8316905	Silver flowering stage	1.612
	SRR8316906	Gold flowering stage	2.534
	SRR8316907	Gold flowering stage	3.462
	SRR8316908	Gold flowering stage	7.247
SRP132670	SRR6706286	Control	150.429
	SRR6706287	Light intensity 50%	137.503
	SRR6706288	Light intensity 20%	154.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.331
	CNS0095593	Slightly white alabastrum(diploid) 2	62.385
	CNS0095594	Slightly white alabastrum(diploid) 3	42.819
	CNS0095595	Whole white alabastrum(diploid) 2	52.357
	CNS0095596	Whole white alabastrum(diploid) 3	51.154
	CNS0095597	Whole white alabastrum(diploid) 4	41.079
	CNS0095598	Silvery flower (diploied) 1	37.553
	CNS0095599	Silvery flower (diploied) 2	32.750
	CNS0095600	Silvery flower (diploied) 3	22.113
	CNS0095601	Golden flower (diploid) 1	27.987
	CNS0095602	Golden flower (diploid) 2	26.330
	CNS0095603	Golden flower (diploid) 3	25.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.666
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.804
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.779
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.941
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.589
	CNS0095610	Silvery flower (tetraploid) 1	1.340
	CNS0095611	Silvery flower (tetraploid) 2	1.248
	CNS0095612	Silvery flower (tetraploid) 3	0.393
	CNS0095613	Golden flower (tetraploid) 1	0.421
	CNS0095614	Golden flower (tetraploid) 2	0.644
	CNS0095615	Golden flower (tetraploid) 3	0.379
CRA001975	CRR073297	Stem 1	111.536
	CRR073298	Stem 2	108.967
	CRR073299	Stem 3	103.380
	CRR073300	Leaf 1	134.917
	CRR073301	Leaf 2	149.459
	CRR073302	Leaf 3	149.705
	CRR073303	Juvenile bud 1	163.837
	CRR073304	Juvenile bud 2	96.868
	CRR073305	Juvenile bud 3	277.607
	CRR073306	Third green 1	2.268
	CRR073307	Third green 2	2.231
	CRR073308	Third green 3	3.345
	CRR073309	Second white 1	0.701
	CRR073310	Second white 2	0.606
	CRR073311	Second white 3	0.406
	CRR073312	Silver flowering 1	0.266
	CRR073313	Silver flowering 2	1.592
	CRR073314	Silver flowering 3	0.325
	CRR073315	Gold flowering 1	10.975
	CRR073316	Gold flowering 2	13.563
	CRR073317	Gold flowering 3	11.633
	CRR073318	Tawny withering 1	49.306
	CRR073319	Tawny withering 2	39.350
	CRR073320	Tawny withering 3	54.048