Gene detail

Detail information of GWHGAAZE008659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007207292.1	1.7101E-169	hypothetical protein PRUPE_ppa000389m1g, partial [Prunus persica]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	4E-145	Structural maintenance of chromosomes protein 3
trEMBL	tr\|M5W5A1\|M5W5A1_PRUPE	6E-170	Uncharacterized protein {ECO:0000313\|EMBL:EMJ08491.1} (Fragment)
TAIR10	AT2G27170.2	8E-120	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	86845083	86854014	+
GWHAAZE00000002	mRNA	86845083	86854014	+
GWHAAZE00000002	exon	86845083	86845157	+
GWHAAZE00000002	exon	86847415	86847502	+
GWHAAZE00000002	exon	86847588	86847737	+
GWHAAZE00000002	exon	86848646	86848797	+
GWHAAZE00000002	exon	86849274	86849401	+
GWHAAZE00000002	exon	86849779	86849852	+
GWHAAZE00000002	exon	86849922	86850073	+
GWHAAZE00000002	exon	86851117	86851285	+
GWHAAZE00000002	exon	86851628	86851756	+
GWHAAZE00000002	exon	86852187	86852270	+
GWHAAZE00000002	exon	86852582	86852756	+
GWHAAZE00000002	exon	86853824	86854014	+
GWHAAZE00000002	five_prime_UTR	86845083	86845157	+
GWHAAZE00000002	five_prime_UTR	86847415	86847502	+
GWHAAZE00000002	five_prime_UTR	86847588	86847737	+
GWHAAZE00000002	five_prime_UTR	86848646	86848693	+
GWHAAZE00000002	CDS	86848694	86848797	+
GWHAAZE00000002	CDS	86849274	86849401	+
GWHAAZE00000002	CDS	86849779	86849852	+
GWHAAZE00000002	CDS	86849922	86850073	+
GWHAAZE00000002	CDS	86851117	86851285	+
GWHAAZE00000002	CDS	86851628	86851756	+
GWHAAZE00000002	CDS	86852187	86852270	+
GWHAAZE00000002	CDS	86852582	86852756	+
GWHAAZE00000002	CDS	86853824	86854014	+

Transcript Sequence
>GWHTAAZE008669 CCAGAAAGTTCTGATGTGATACCTGTTCTAAAGAAATTGAGATTCCCTCACAATTATTCTCCGGCTTTTGAGGAGGTGTTTGCTAGAACTGTAATTTGCCGAAATCTGGATGTGGCTAGGGATGTTGCACGCACTTGGGACCTAGACTGCATAACGTTGGAAGGTGACAAAGTGAGCCAGAATGGTTGTATGACAGGAGGATTTTATGATTATAGGCATTCAAAACTGAAGTTAAGGAACACTATTAAACAGAATACAGAGTCCATTGACGAGAAGAGAATTGAATTGGAGAAAGTTGAATCCAATCTTAAAGAAATAGACCAGAAAATTAGTGAACTTGTTGGTGAGCAACAGAAAGCTGATGCCAAGTTGGTATGACAAATCAGCGTTGGAACAGCTTAAACGGGATAATGCTAACGCTAAAATCAGCAGCACTCCATTTCCAAAGTCATTGAGAAGAAGGTTGACACAAGAACTGGAGGCAATAAAATCTTCAGAAGAGCCCAAAACGTTACATAGTGAAGCTGAGCTAAAAACGCAAGAACTAAGGGTCACTGAGTTACTAGCTGAAGATGTGACACACCATCTCAAAAGAGTTTCTGAAAGCATAGAGGAACAAACCAGTAAGCTTCAAGAGATCAAAGAAAAAAGAAATGAGTTAAAGGTGACCAGTGAAGATAACTATCAAAGGGCAGTCGAAGATAATAACAAAGACCTCGAAGAACTGTTAACTACAAGAAATATTCTCGTCGCCAAAGAAGAACAGTACTCGAAGAAAATCAGGGAATTGGGTCCATTGTCTTTTGATTCCTTGGACAGGTATAAGAGGAAGAGCGTAAAAGACTTGTATGAAATGCTTCACAATTGCAATGAGCAACTGGAACAATTCAGCCATGTAAATAAAAAAGCACTCAATCAGTATGCAAATTTTGCAGAACAGCGAGAAGAATTCCAGAAAAGGAAGGAGGAATTAATCGCTGGTGATGAGAAAATCAAAGAACTTATATCTGTGCTGGATCAACAGAAAGATGAATCAATAGAGCGTACCTTCAAAGGTGTTGCCAAGCATTTTCGAGAAGCTTTTTCGGAACTTGTCCAAGGTGGTCATGGAACGTTAGATGGTGATCAAGATTCTGATGAAAACGACCAGTCTCTTGCACCTCGTGTGGAAGGAAGGGTTGAGAAATACGTTGGAGTGAAAGTCTCTTTTACTGGGCAAGGGGAAACACAGTCAATGAAGCAGCTGTCCGGAGGTCAGAAAACTGTGGTTGCACTAGCACTCATCTTCGCCATACAGAGATGTGATCCTGCTCCATTTTATCTGTTTGATGAGATAGATGCTGCACTCGATCCTCAGTATAGAACCGCTGTTGCAAATATGATTGAGCGTTTGGCAAACACGACTGGTTCGCAGTTTATAGCAACAACATTCCGGCAAGAGCTTGTAAATGTTGCTGACAAGATATACGGGGTTACTCACGCAAACCGGGTTAGCCGCGTCAGCCTTGTCACCAAGGCACAAGCAGTAAATTTTGTTGAGAATGACCACTCCCACAATGTTGAATGA

Network for GWHGAAZE008659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	48	376	2.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.481
	SRR3591706	second leaf	0.095
	SRR3591707	mature leaf	0.168
	SRR3591708	Shoot apex	0.338
	SRR3591709	Stem	0.712
	SRR3591710	White floral bud	0.233
	SRR3591711	White flower	0.069
	SRR3591712	Green floral bud	0.759
	SRR3591713	Yellow flower	0.070
SRP173429	SRR8316895	Juvenile bud stage	0.689
	SRR8316896	Juvenile bud stage	0.976
	SRR8316897	Juvenile bud stage	0.529
	SRR8316894	Third green stage	0.242
	SRR8316900	Third green stage	0.708
	SRR8316901	Third green stage	1.367
	SRR8316898	Complete white stage	0.284
	SRR8316899	Complete white stage	1.227
	SRR8316903	Complete white stage	0.439
	SRR8316902	Silver flowering stage	0.106
	SRR8316904	Silver flowering stage	0.133
	SRR8316905	Silver flowering stage	0.069
	SRR8316906	Gold flowering stage	0.258
	SRR8316907	Gold flowering stage	0.089
	SRR8316908	Gold flowering stage	0.186
SRP132670	SRR6706286	Control	0.664
	SRR6706287	Light intensity 50%	0.687
	SRR6706288	Light intensity 20%	0.854
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.995
	CNS0095593	Slightly white alabastrum(diploid) 2	0.397
	CNS0095594	Slightly white alabastrum(diploid) 3	0.607
	CNS0095595	Whole white alabastrum(diploid) 2	0.531
	CNS0095596	Whole white alabastrum(diploid) 3	0.257
	CNS0095597	Whole white alabastrum(diploid) 4	0.412
	CNS0095598	Silvery flower (diploied) 1	0.056
	CNS0095599	Silvery flower (diploied) 2	0.307
	CNS0095600	Silvery flower (diploied) 3	0.287
	CNS0095601	Golden flower (diploid) 1	0.084
	CNS0095602	Golden flower (diploid) 2	0.012
	CNS0095603	Golden flower (diploid) 3	0.086
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.371
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.315
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.610
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.652
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.347
	CNS0095610	Silvery flower (tetraploid) 1	0.949
	CNS0095611	Silvery flower (tetraploid) 2	0.881
	CNS0095612	Silvery flower (tetraploid) 3	0.961
	CNS0095613	Golden flower (tetraploid) 1	0.730
	CNS0095614	Golden flower (tetraploid) 2	1.451
	CNS0095615	Golden flower (tetraploid) 3	0.436
CRA001975	CRR073297	Stem 1	0.471
	CRR073298	Stem 2	0.359
	CRR073299	Stem 3	0.334
	CRR073300	Leaf 1	0.675
	CRR073301	Leaf 2	1.249
	CRR073302	Leaf 3	0.041
	CRR073303	Juvenile bud 1	0.256
	CRR073304	Juvenile bud 2	0.533
	CRR073305	Juvenile bud 3	0.627
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.050
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.044
	CRR073311	Second white 3	0.016
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.036
	CRR073315	Gold flowering 1	0.003
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.013
	CRR073318	Tawny withering 1	0.174
	CRR073319	Tawny withering 2	0.203
	CRR073320	Tawny withering 3	0.603