Detail information of GWHGAAZE008660


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010101509.11.88798E-09hypothetical protein L484_017259 [Morus notabilis]
trEMBLtr|W9RFK8|W9RFK8_9ROSA7E-10Uncharacterized protein {ECO:0000313|EMBL:EXB88506.1}
TAIR10AT1G28060.10.000001Pre-mRNA-splicing factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene8686161986862041+
GWHAAZE00000002mRNA8686161986862041+
GWHAAZE00000002exon8686161986862041+
GWHAAZE00000002CDS8686161986862041+
Transcript Sequence

Network for GWHGAAZE008660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06544.13DUF1115841412.30E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12843PRPF3, PRP3 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.320
SRR3591706second leaf0.000
SRR3591707mature leaf0.220
SRR3591708Shoot apex0.000
SRR3591709Stem0.141
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 4.425
SRR8316896Juvenile bud stage 10.128
SRR8316897Juvenile bud stage 3.071
SRR8316894Third green stage 1.564
SRR8316900Third green stage 6.082
SRR8316901Third green stage 6.330
SRR8316898Complete white stage 0.298
SRR8316899Complete white stage 4.854
SRR8316903Complete white stage 0.497
SRR8316902Silver flowering stage0.500
SRR8316904Silver flowering stage0.538
SRR8316905Silver flowering stage0.244
SRR8316906Gold flowering stage 0.470
SRR8316907Gold flowering stage 0.526
SRR8316908Gold flowering stage 0.139
SRP132670SRR6706286Control3.390
SRR6706287Light intensity 50%5.835
SRR6706288Light intensity 20%5.920
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.603
CNS0095593Slightly white alabastrum(diploid) 26.154
CNS0095594Slightly white alabastrum(diploid) 36.891
CNS0095595Whole white alabastrum(diploid) 29.177
CNS0095596Whole white alabastrum(diploid) 39.802
CNS0095597Whole white alabastrum(diploid) 411.486
CNS0095598Silvery flower (diploied) 12.936
CNS0095599Silvery flower (diploied) 22.680
CNS0095600Silvery flower (diploied) 30.617
CNS0095601Golden flower (diploid) 11.592
CNS0095602Golden flower (diploid) 21.641
CNS0095603Golden flower (diploid) 30.673
CNS0095604Slightly white alabastrum(tetraploid) 10.161
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.153
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.060
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 112.841
CRR073298Stem 29.032
CRR073299Stem 38.457
CRR073300Leaf 111.401
CRR073301Leaf 210.200
CRR073302Leaf 39.223
CRR073303Juvenile bud 18.931
CRR073304Juvenile bud 25.795
CRR073305Juvenile bud 38.705
CRR073306Third green 10.789
CRR073307Third green 21.486
CRR073308Third green 31.286
CRR073309Second white 10.283
CRR073310Second white 20.000
CRR073311Second white 30.072
CRR073312Silver flowering 10.267
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.835
CRR073316Gold flowering 22.825
CRR073317Gold flowering 31.673
CRR073318Tawny withering 112.587
CRR073319Tawny withering 27.540
CRR073320Tawny withering 39.345