Gene detail

Detail information of GWHGAAZE008669

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008449833.1	0	PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Cucumis melo]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	2E-151	Structural maintenance of chromosomes protein 3
trEMBL	tr\|F6H9I4\|F6H9I4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48877.1}
TAIR10	AT2G27170.2	2E-124	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	87318512	87344134	+
GWHAAZE00000002	mRNA	87318512	87344134	+
GWHAAZE00000002	exon	87318512	87318581	+
GWHAAZE00000002	exon	87318703	87318770	+
GWHAAZE00000002	exon	87318879	87318960	+
GWHAAZE00000002	exon	87325992	87326167	+
GWHAAZE00000002	exon	87328015	87328260	+
GWHAAZE00000002	exon	87328494	87328615	+
GWHAAZE00000002	exon	87334075	87334173	+
GWHAAZE00000002	exon	87336693	87336875	+
GWHAAZE00000002	exon	87337016	87337115	+
GWHAAZE00000002	exon	87338429	87338577	+
GWHAAZE00000002	exon	87339040	87339241	+
GWHAAZE00000002	exon	87341480	87341567	+
GWHAAZE00000002	exon	87341653	87341676	+
GWHAAZE00000002	exon	87342721	87342866	+
GWHAAZE00000002	exon	87343293	87343476	+
GWHAAZE00000002	exon	87343854	87343927	+
GWHAAZE00000002	exon	87343997	87344134	+
GWHAAZE00000002	CDS	87318512	87318581	+
GWHAAZE00000002	CDS	87318703	87318770	+
GWHAAZE00000002	CDS	87318879	87318960	+
GWHAAZE00000002	CDS	87325992	87326167	+
GWHAAZE00000002	CDS	87328015	87328260	+
GWHAAZE00000002	CDS	87328494	87328615	+
GWHAAZE00000002	CDS	87334075	87334173	+
GWHAAZE00000002	CDS	87336693	87336875	+
GWHAAZE00000002	CDS	87337016	87337115	+
GWHAAZE00000002	CDS	87338429	87338577	+
GWHAAZE00000002	CDS	87339040	87339241	+
GWHAAZE00000002	CDS	87341480	87341567	+
GWHAAZE00000002	CDS	87341653	87341676	+
GWHAAZE00000002	CDS	87342721	87342866	+
GWHAAZE00000002	CDS	87343293	87343476	+
GWHAAZE00000002	CDS	87343854	87343927	+
GWHAAZE00000002	CDS	87343997	87344134	+

Transcript Sequence
>GWHTAAZE008679 ATGTTGCGCTGTGATTTACTTTACTCTGCAGTTGGTGCTAATGGATCTGGCAAATCGAACTTTTTCCAAGCTATCCGTTTTGTGATAAGTGACCTCTTCCAACAACTGCGCACTGAAGACAGGCATAAACTCCTACATGAAGGTGCAGGACGCCAATTGCTAACTGCTTTTGTGGAGATTGTGTTTGACAACTCTGAACAACGCATCCCTGTAATATTTAGTAAGAAGAGAAACCAGATAATTCAAATTGTTCAGTACTTGGACGAGAGATTAAGAGAGCTGGATGAAGAGAGAGCAGAGCTGAAAAACTTTCAGCAGATTGACAATAAGAGGAAATACTTACAGTACACGATATATGACAAAGAACTTCATGTTGCACAACAGAAACTAGTGGAGATAGAAGTGGCTCGGAACAATGTTTCCAAAAAATCAACTGAGAGGAATAAAAAATTGTCAGACGCAGTAGAAGAGTTGAACGAGTTGGACAAGTCAGCTAAAGATTTGACAAGAGAAGTTCAAAGTTTAATTAGAGAGAAAGAAGCATTAGAGAAGCAACAGGCCAATGCTATTCAAATGCGTGCTCAGCTTGAGCTTGATGAAAAAGACCTTCAAGAAAAGATCACTGGAATTATTAAAGCCAAGGAAGATGCAACAAAACAGCTTGAGCTTCTCCGCAGAGAAATCGAGGAATCCACAGACGAGCTCAACAAAATCAAGCCATTGTACCACAAGCAAGTCAGAGAGGAAGAGGACATTACACGAGGGATAATGGAGCGTGAAAATCGCCTCAACATTCTTTATCAGAAACAAGGTCGTACAACCGAGTTTTCTAGTAAAGCCGCCGTGACAAGTGGCTTCAAGATTATGTTTCAGGAGAAAAAACTCAATGATGAAATTGATCAGCTTAAAACCGAGCTGGATAAGGCGCAAACACACGTTAAGGGTTTTGAAACTGAAATAGCAGCATTACAATCTGTTATATCTCAGAATCGTGACAGTTACAATCAGTACAGGTCACAGAGGGACAAGCTGAACGATGAGCGGAAGTATTTGTGGTGGAAAGAAAATGATCTAGCTAATGAAATTGATCGACTTAAAACAGAAGTTACAAAGGCGGAGAAAGACCTACAGTTCTCGATTCCTAGTGATATTTGGAGAGGGATGAGCTCTGTTAAAAGGATACACAAGCGGAAGTCAATGGGAAAAAAAATTAAAGAAGAATGTTTCTCGATTTTGGACTTGCTCGACTGTGAGGAAAAGTATTTCACTGCTGTTGAAATTGCTGCAGGAAACAGCTTATTTCATTTGGTGGTTGAAAATGATGGAACATCAACACATATGATTGAAAACCTTTGTAAAGAAAACGGTGGAAGAGTTACGTTTATTCCATTAAATACAGTGCAGGCCCAACAAGTTCCTTATCCAGAAAGTTCTGATGTGATACCTGTTCTGAAGAAATTGAGATTCCCTCACAATTATTCTCCGGCTTTTGAGGAGGTGTTTGCTAGAACTGTAATTTGCCGAAATCTGGATGTGGCTAGGGACGTTGCACGCACTTGGGACCTAGACTGCATAACGTTGGAAGGTGACAAAGTGAGCCAGAATGGTTACCAGAAAATTAGTGAACTTGTTGGTGAGCAACAGAAAGCTGATGCCAAGTTGGCGTATGACAAATCAGCGTTGGAACAGCTTAAACGGGATAATGCTAACGCTAAAAATCAGCAGCACTCCATTTCCAAGGTCATTGAGAAGAAGATTGAGACCAGAAAAGCCGAGCTTGAGACCAATCTTTTAACAAACTTGGCAAAAAGGACACAAGAACTGGAGGCAATAAAATCTTCAGAAGAGCCCAAAACGTTACATAGTGAAGCTGAACTAAAAAGGCAAGAACTAAGGGTCACTGAGTTACTAGCTAAAGATGTGACACACCATCTCAAAAGAGTTTCTGAAAGCATAGAGGAACAAACCAGTAAGCTTCAAGAGATCAAAGAAAAAAGAAATGAGTTAAAGGTGACCAGTGAAGATAACTATCAAAGGGCAGTCGAAGATAATAACAAAGACCTCGAACAACTATTAACTACAAGAAATATTCTCGCCGCCAAAGAAGAACAAGATTCAAGAAAATCAGGAATTGGGTCCATTGTCTTTTGA

Network for GWHGAAZE008669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	10	105	4.40E-14
PF06470.14	SMC_hinge	411	516	2.50E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.064
	SRR3591706	second leaf	0.045
	SRR3591707	mature leaf	0.019
	SRR3591708	Shoot apex	0.033
	SRR3591709	Stem	0.132
	SRR3591710	White floral bud	0.124
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.180
	SRR3591713	Yellow flower	0.036
SRP173429	SRR8316895	Juvenile bud stage	0.998
	SRR8316896	Juvenile bud stage	1.540
	SRR8316897	Juvenile bud stage	0.085
	SRR8316894	Third green stage	0.438
	SRR8316900	Third green stage	0.642
	SRR8316901	Third green stage	0.464
	SRR8316898	Complete white stage	0.326
	SRR8316899	Complete white stage	0.986
	SRR8316903	Complete white stage	0.910
	SRR8316902	Silver flowering stage	0.169
	SRR8316904	Silver flowering stage	0.573
	SRR8316905	Silver flowering stage	0.218
	SRR8316906	Gold flowering stage	0.258
	SRR8316907	Gold flowering stage	0.225
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	0.500
	SRR6706287	Light intensity 50%	0.577
	SRR6706288	Light intensity 20%	0.580
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.536
	CNS0095593	Slightly white alabastrum(diploid) 2	0.184
	CNS0095594	Slightly white alabastrum(diploid) 3	0.431
	CNS0095595	Whole white alabastrum(diploid) 2	0.304
	CNS0095596	Whole white alabastrum(diploid) 3	0.154
	CNS0095597	Whole white alabastrum(diploid) 4	0.186
	CNS0095598	Silvery flower (diploied) 1	0.845
	CNS0095599	Silvery flower (diploied) 2	0.489
	CNS0095600	Silvery flower (diploied) 3	0.338
	CNS0095601	Golden flower (diploid) 1	0.230
	CNS0095602	Golden flower (diploid) 2	0.353
	CNS0095603	Golden flower (diploid) 3	0.246
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.675
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.320
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.616
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.520
	CNS0095610	Silvery flower (tetraploid) 1	0.839
	CNS0095611	Silvery flower (tetraploid) 2	0.896
	CNS0095612	Silvery flower (tetraploid) 3	1.076
	CNS0095613	Golden flower (tetraploid) 1	0.246
	CNS0095614	Golden flower (tetraploid) 2	0.369
	CNS0095615	Golden flower (tetraploid) 3	0.168
CRA001975	CRR073297	Stem 1	0.711
	CRR073298	Stem 2	0.802
	CRR073299	Stem 3	0.270
	CRR073300	Leaf 1	0.385
	CRR073301	Leaf 2	0.385
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.323
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.148
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.090
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.085
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.031
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.285
	CRR073316	Gold flowering 2	0.340
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.153
	CRR073319	Tawny withering 2	0.016
	CRR073320	Tawny withering 3	0.526