Gene detail

Detail information of GWHGAAZE008672

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAM15423.1	0	putative chromosome associated protein [Arabidopsis thaliana]
Swissprot	tr\|Q56YN8\|SMC3_ARATH	0	Structural maintenance of chromosomes protein 3
trEMBL	tr\|D7LG83\|D7LG83_ARALL	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EFH57143.1}
TAIR10	AT2G27170.2	1E-157	Structural maintenance of chromosomes (SMC) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	87391863	87415890	+
GWHAAZE00000002	mRNA	87391863	87415890	+
GWHAAZE00000002	exon	87391863	87391878	+
GWHAAZE00000002	exon	87392659	87392697	+
GWHAAZE00000002	exon	87392837	87392904	+
GWHAAZE00000002	exon	87393018	87393089	+
GWHAAZE00000002	exon	87396961	87397040	+
GWHAAZE00000002	exon	87397168	87397246	+
GWHAAZE00000002	exon	87397539	87397656	+
GWHAAZE00000002	exon	87397730	87397905	+
GWHAAZE00000002	exon	87400018	87400139	+
GWHAAZE00000002	exon	87400507	87400651	+
GWHAAZE00000002	exon	87402442	87402614	+
GWHAAZE00000002	exon	87402697	87402796	+
GWHAAZE00000002	exon	87403010	87403146	+
GWHAAZE00000002	exon	87404028	87404175	+
GWHAAZE00000002	exon	87414288	87414437	+
GWHAAZE00000002	exon	87414517	87414708	+
GWHAAZE00000002	exon	87415051	87415234	+
GWHAAZE00000002	exon	87415325	87415395	+
GWHAAZE00000002	exon	87415735	87415890	+
GWHAAZE00000002	CDS	87391863	87391878	+
GWHAAZE00000002	CDS	87392659	87392697	+
GWHAAZE00000002	CDS	87392837	87392904	+
GWHAAZE00000002	CDS	87393018	87393089	+
GWHAAZE00000002	CDS	87396961	87397040	+
GWHAAZE00000002	CDS	87397168	87397246	+
GWHAAZE00000002	CDS	87397539	87397656	+
GWHAAZE00000002	CDS	87397730	87397905	+
GWHAAZE00000002	CDS	87400018	87400139	+
GWHAAZE00000002	CDS	87400507	87400651	+
GWHAAZE00000002	CDS	87402442	87402614	+
GWHAAZE00000002	CDS	87402697	87402796	+
GWHAAZE00000002	CDS	87403010	87403146	+
GWHAAZE00000002	CDS	87404028	87404175	+
GWHAAZE00000002	CDS	87414288	87414437	+
GWHAAZE00000002	CDS	87414517	87414708	+
GWHAAZE00000002	CDS	87415051	87415234	+
GWHAAZE00000002	CDS	87415325	87415395	+
GWHAAZE00000002	CDS	87415735	87415890	+

Transcript Sequence
>GWHTAAZE008682 ATGCTTCATCCTAGCTTTGGTGCTAATGGATCTGGTAAATCAAACTTTTTCCACGCCATCCGTTTCGTGATAAGCGACCTCTTCCAACACCTGCGCACTGAAGATAGGCATCAATGCCTACATGAAGGTGCGGGCCACCAAGTGTTATCTGCTTTTGTGGAGATTGTGTTTGACAACTCTGACAATCGCATCCCGGTTGACAAGGAGGAAGTGCGCTTGCGGAGAACAATTGGTCTTAAAAAGGATGAGTATTTCTTGGATGGAAAGCATATCACCAAAACTGAAGTAATGAATTTACTGGAAAGTGCTGGATTCTCTCGCTCCAATCCTTACTATGTTGTGCAGCAGGGAAAAATAACACAATTGACAGCAATGAAAGATCAAGAGCGTCTAGATCTACTGAAGGAAATTGGTGGGACACGAGTATATGAAGAGAGACGGCGTGAAAGTTTGAAAATTATGCAAGAAACTGGTAATAAGAGAAACCAGATAATTCAAGTTGTTCAATACTTGGATGAGAGATTGAGAGAGCTGGATGAAGAGAAAGCGGAGCTGAAAAAATATCAGCAGCTTGACAAGCAGAGGAAATCACTTGAATACACCATATATGACAAAGAACTTCACGATGCACGACAGAAATTAGCGGAGGAAGATGCAATGAAACAGCTTGAGCTTGTACAGAGAGAAATTCAGGAATCTAAAGAGGAGCTTAATCAAATCAAGCCATTGTACAACAAGCAAGTCAGAGAGGAAGAGGATATTACAAGAGGAATAATGGAGCGTGAAAAGCAGCTTAGCATTCTTTATCAAAAGCAAGGTCGTGCTACCCAGTTTGCAAGTAAAGCTGCTCGTGACAAATGGCTTCAAAAGGAAATTGATGAGTACGAACGGGTTTTGTCTTCAAATCTAATGCAGGAGAAAAAACTCATGGATGAAATTGATCAGTTACAAGCTGATCTGGAAGAGAAGGATGCATACATTAAGGGCCGGGAAACTGATATAGCAGCTTTGGGATCCCTTATATCTGGGTATCGTGATGGTTTCAATCAGTATAAGTTGCAAAGAGACAAGCTGCATGATGAGAGGAAGTCCTTGTGGGCGAAAGAAAGTGAACTCTCTTCTGAAATTGACCAGCTTAAACAAGAAGTTATAAAGGCAGAGAAAAGCCTAGATCATGCGACTCCTGGTGATATTAGGAGAGGACTGAATTCTGTTAGGAGGATATGCAGACAGTCTGAAATTTCTGGAGTATGTGGCCCGATTTTTGAGTTGCTGGATTGTGATGAGAAGTTTTTCACTGCTGTTGAAGTTACTGCTGGAAATAGGACTTTAATGCAGAGAAGGGGACGAGTAACATTTATTCCATTGAATAGGGTGAAGGCCCCACACGTTAATTATCCACAGAGTTCTGATGTGATACCTCTTCTGAAGAAACTGAAATTCTCTCGCAATTATACTCCAGCATTTGCGCAGATAGACCAGAGAATTAATGAACTTGTTGCTGAGCAGCAGAAAAATGATGCCAAGCTGGCACATGACAAATCAGAGTTGGATCAGCTTAAACAAGATTGTGCTAATGCTAATAAGCAGAAGCAATCTATTTCCGTGGTCCTTGAGAAGAAGGGGAAGTTACTTGAAAACGTAAAGGCTCAAATTCGTCAACTTAATTCAAGTATTGATATGAAAAGAGATGAGATGGGGACTGATCTTGTTGATCACTTATCGCCAGAGGAAAAAGACTCCTTGTCTCGATTGAACCCTGAAATTACAGAGTTGAAAGAGAAGCTTATTTCCTGCAGGACTAATCGCATAGAGACTGAAACGAGAAAGGCAGAGCTTGAGACCAATCTGTCAACAAACCTTGTTAGGCGGAAACAAGAATTGGAGGCAGAAAAATTGTCTGCAGAGCCCGACATGTTTCACAGTGAAGCAGAACAGAAACGGCAGGAACTAAGGGATGCAAAGTTAAGAGTTGAAGATGTGACACAGCAACTGAAAAGAGTTTCTGATAGTATTGAAGAACGAACCAGGAAGCTTAAAAAGATCAAAGATGAAAAAAACAAGTTGAAGACCATAGAAGATGACTATCAAAGGGCCCTTCAGGATGAAGCAAAAGACTTTGAACAACTATTAAGTAAAAGAAATATTCTCGTTGCCAAACAAGAAGAGTACTCAAAGAAAATCAGGGAATTAGGTCCATTGTCTTCCGATGCCTTTGACATGTAA

Network for GWHGAAZE008672

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.20	SMC_N	7	326	1.50E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06669	SMC3, CSPG6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114

Gene Ontology

GO term	Ontology	Name
GO:0051276	biological_process	chromosome organization
GO:0005694	cellular_component	chromosome
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.258
	SRR3591706	second leaf	19.130
	SRR3591707	mature leaf	17.828
	SRR3591708	Shoot apex	23.216
	SRR3591709	Stem	25.020
	SRR3591710	White floral bud	18.872
	SRR3591711	White flower	25.144
	SRR3591712	Green floral bud	18.109
	SRR3591713	Yellow flower	20.782
SRP173429	SRR8316895	Juvenile bud stage	13.511
	SRR8316896	Juvenile bud stage	18.507
	SRR8316897	Juvenile bud stage	8.847
	SRR8316894	Third green stage	7.614
	SRR8316900	Third green stage	15.608
	SRR8316901	Third green stage	14.944
	SRR8316898	Complete white stage	4.922
	SRR8316899	Complete white stage	18.240
	SRR8316903	Complete white stage	15.907
	SRR8316902	Silver flowering stage	6.564
	SRR8316904	Silver flowering stage	12.593
	SRR8316905	Silver flowering stage	5.545
	SRR8316906	Gold flowering stage	16.351
	SRR8316907	Gold flowering stage	17.766
	SRR8316908	Gold flowering stage	17.022
SRP132670	SRR6706286	Control	14.246
	SRR6706287	Light intensity 50%	15.260
	SRR6706288	Light intensity 20%	14.605
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.605
	CNS0095593	Slightly white alabastrum(diploid) 2	7.684
	CNS0095594	Slightly white alabastrum(diploid) 3	7.490
	CNS0095595	Whole white alabastrum(diploid) 2	7.727
	CNS0095596	Whole white alabastrum(diploid) 3	3.991
	CNS0095597	Whole white alabastrum(diploid) 4	5.948
	CNS0095598	Silvery flower (diploied) 1	14.522
	CNS0095599	Silvery flower (diploied) 2	16.398
	CNS0095600	Silvery flower (diploied) 3	20.471
	CNS0095601	Golden flower (diploid) 1	16.419
	CNS0095602	Golden flower (diploid) 2	23.284
	CNS0095603	Golden flower (diploid) 3	24.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.702
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.829
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.027
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.538
	CNS0095610	Silvery flower (tetraploid) 1	22.653
	CNS0095611	Silvery flower (tetraploid) 2	23.667
	CNS0095612	Silvery flower (tetraploid) 3	20.625
	CNS0095613	Golden flower (tetraploid) 1	8.693
	CNS0095614	Golden flower (tetraploid) 2	15.912
	CNS0095615	Golden flower (tetraploid) 3	16.403
CRA001975	CRR073297	Stem 1	21.001
	CRR073298	Stem 2	19.822
	CRR073299	Stem 3	13.100
	CRR073300	Leaf 1	18.283
	CRR073301	Leaf 2	13.734
	CRR073302	Leaf 3	11.298
	CRR073303	Juvenile bud 1	9.257
	CRR073304	Juvenile bud 2	6.931
	CRR073305	Juvenile bud 3	10.876
	CRR073306	Third green 1	2.986
	CRR073307	Third green 2	2.590
	CRR073308	Third green 3	4.624
	CRR073309	Second white 1	2.220
	CRR073310	Second white 2	6.659
	CRR073311	Second white 3	4.926
	CRR073312	Silver flowering 1	3.130
	CRR073313	Silver flowering 2	3.202
	CRR073314	Silver flowering 3	2.174
	CRR073315	Gold flowering 1	4.112
	CRR073316	Gold flowering 2	5.984
	CRR073317	Gold flowering 3	0.874
	CRR073318	Tawny withering 1	9.963
	CRR073319	Tawny withering 2	10.131
	CRR073320	Tawny withering 3	8.816