Gene detail

Detail information of GWHGAAZE008709

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI24416.3	8.966E-157	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q7G9P4\|ALDO3_ARATH	2E-135	Abscisic-aldehyde oxidase
trEMBL	tr\|F6HAB3\|F6HAB3_VITVI	5E-156	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49192.1}
TAIR10	AT2G27150.2	3E-108	abscisic aldehyde oxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	88695621	88705527	+
GWHAAZE00000002	mRNA	88695621	88705527	+
GWHAAZE00000002	exon	88695621	88695678	+
GWHAAZE00000002	exon	88697439	88697545	+
GWHAAZE00000002	exon	88697641	88697850	+
GWHAAZE00000002	exon	88698425	88698625	+
GWHAAZE00000002	exon	88699090	88699135	+
GWHAAZE00000002	exon	88705007	88705527	+
GWHAAZE00000002	CDS	88695621	88695678	+
GWHAAZE00000002	CDS	88697439	88697545	+
GWHAAZE00000002	CDS	88697641	88697850	+
GWHAAZE00000002	CDS	88698425	88698625	+
GWHAAZE00000002	CDS	88699090	88699135	+
GWHAAZE00000002	CDS	88705007	88705527	+

Transcript Sequence
>GWHTAAZE008719 ATGAAGTCGGTGACTCCACCTGTGGTTGTGCTTGTCCATAAAGGAGAGCCCACTCTAGATATCCCAAAAGGAGGAGAGAACATAGGATCCAACACCCCATTTGGCGATGAACCTTTATTTGCGGATGATCTTACAAGCTATGCTGCCTCACCTGTTGCTTTTGTGGTGGCAGATACGCAAAAGCGTGCAGATGTGGGTGCTGCAATGGCCATCGTCGATTACGACACCGAAGGTTTAGGACCACCTATTTTAACGGTTAAAGAGGCTTTTGAACGATCAAGCTTTTTTAAGGTCCCTTCTGACAGGTATCCAGCACAGGTTGGTGATTTCTCAAAAGGAATGTCCGAAGCGGATCAGAAAATTTTCTCTGCTAAGTACTTTTTCTCTATGGAAACACAAACCGCCCTTGCCATTCTAGACAAAGACAACTGCATGGTGGTTTACAGTTCAAGTCGGTGCCCTGAGAACATGCATACTGTTATTGCAAGGTGTCTTGGTATTCTAGAACATAATGTCCGTGTTATTAGGAGAAGGGTTGGAGGAGGCTTTGGTGGAAAGATCACGAAATCTATGCCTTTGTTGTCTGTAGAGGCACCCCTACTTCTAAACCTGCAAATCAGAGCATCTGCACTTGCAGCACACAAATTACAGCGCCCTGTCCGTATATATGTCAATAGGAAGACTGATATGCTGATGGCAGGAGGAAGACAGCCTATGAAGATAACATACAGTGTTGGCTTCAAATCTAACAGGAAGATCACAGCCTTACACCTTGATATTTTAATCAATTCGGGGATAGTTACAGATTTAAGCCCCATAATGCCGGGGAACATGCTAGGTTCACTTAAGATGTACGATTGGGGTGCATTATCTTTCAATATAAAGTTATGCAAAACAAATACTAGCACTAAAACCTCTATGTGGGGCCCTGGGGAGGTAAATGCAACTCTTCTCGCAGAAGCTATAATAGAACATGTGGCATCTACCCTTTCAATGGAAGTTGATTTTATTAGAACAAAAAATCTTCACACGTACGAAAGCCTAAGCTTTTTTTATGAAGGCAGTGCAGGGGAGCCTCAAGAGTATACTTTGCCTTTCGTGAAGGAGAATAACAAGAAAAACAGTGGAAGGATGATTTCTTAA

Network for GWHGAAZE008709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01315.23	Ald_Xan_dh_C	19	76	2.00E-07
PF02738.19	Ald_Xan_dh_C2	104	353	2.00E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09842	AAO3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.062
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.065
	SRR3591712	Green floral bud	0.008
	SRR3591713	Yellow flower	0.063
SRP173429	SRR8316895	Juvenile bud stage	0.002
	SRR8316896	Juvenile bud stage	0.035
	SRR8316897	Juvenile bud stage	0.020
	SRR8316894	Third green stage	0.006
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.007
	SRR8316898	Complete white stage	0.043
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.089
	SRR8316902	Silver flowering stage	0.051
	SRR8316904	Silver flowering stage	0.083
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.132
	SRR8316907	Gold flowering stage	0.208
	SRR8316908	Gold flowering stage	0.511
SRP132670	SRR6706286	Control	0.045
	SRR6706287	Light intensity 50%	0.025
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.007
	CNS0095593	Slightly white alabastrum(diploid) 2	0.001
	CNS0095594	Slightly white alabastrum(diploid) 3	0.040
	CNS0095595	Whole white alabastrum(diploid) 2	0.024
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.061
	CNS0095599	Silvery flower (diploied) 2	0.061
	CNS0095600	Silvery flower (diploied) 3	0.261
	CNS0095601	Golden flower (diploid) 1	0.087
	CNS0095602	Golden flower (diploid) 2	0.229
	CNS0095603	Golden flower (diploid) 3	0.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.001
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.024
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.509
	CNS0095614	Golden flower (tetraploid) 2	0.181
	CNS0095615	Golden flower (tetraploid) 3	0.052
CRA001975	CRR073297	Stem 1	0.016
	CRR073298	Stem 2	0.020
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.042
	CRR073301	Leaf 2	0.025
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.008
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.074
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.017
	CRR073314	Silver flowering 3	0.025
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.010
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.029
	CRR073319	Tawny withering 2	0.001
	CRR073320	Tawny withering 3	0.000