Gene detail

Detail information of GWHGAAZE008717

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI16571.3	1.7309E-119	unnamed protein product [Vitis vinifera]
Swissprot	tr\|F4I1T7\|NP214_ARATH	1E-88	Nuclear pore complex protein NUP214 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|A0A061GS92\|A0A061GS92_THECC	6E-112	Nuclear pore complex protein, putative {ECO:0000313\|EMBL:EOY32268.1}
TAIR10	AT1G55540.1	1E-77	Nuclear pore complex protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	88894679	88909913	-
GWHAAZE00000002	mRNA	88894679	88909913	-
GWHAAZE00000002	exon	88909743	88909913	-
GWHAAZE00000002	exon	88908235	88908403	-
GWHAAZE00000002	exon	88907023	88907169	-
GWHAAZE00000002	exon	88906447	88906529	-
GWHAAZE00000002	exon	88905951	88906060	-
GWHAAZE00000002	exon	88904761	88904900	-
GWHAAZE00000002	exon	88901947	88902109	-
GWHAAZE00000002	exon	88900993	88901777	-
GWHAAZE00000002	exon	88900443	88900900	-
GWHAAZE00000002	exon	88899695	88899761	-
GWHAAZE00000002	exon	88895324	88895559	-
GWHAAZE00000002	exon	88894679	88894798	-
GWHAAZE00000002	CDS	88909743	88909913	-
GWHAAZE00000002	CDS	88908235	88908403	-
GWHAAZE00000002	CDS	88907023	88907169	-
GWHAAZE00000002	CDS	88906447	88906529	-
GWHAAZE00000002	CDS	88905951	88906060	-
GWHAAZE00000002	CDS	88904761	88904900	-
GWHAAZE00000002	CDS	88901947	88902109	-
GWHAAZE00000002	CDS	88900993	88901777	-
GWHAAZE00000002	CDS	88900443	88900900	-
GWHAAZE00000002	CDS	88899695	88899761	-
GWHAAZE00000002	CDS	88895324	88895559	-
GWHAAZE00000002	CDS	88894679	88894798	-

Transcript Sequence
>GWHTAAZE008727 ATGGAATCTGCTAAAGAGGGGGTTAGCGGTTCGTCTATACAAAAGCTGAGTATTGTTGACGTACCCATTGGAAAGGTTTCCATATTGGCTTTGTCTGCAGACTCTTCAACTCTTGCTGCTATTATAGGTGGTGACCTTCAATTCTTTGCCGTTACTGCCCTCCTTAATCAGGAGCAAAAAGCCTCTTTCTCCATTTCACTTGGTGACTCAATTTGCATAAAGGACATGCGATGGACTACAAGATTCGAAAATTGTTACCTTCTTCTTTCAAGTAATGGGAAGTTATACTATGGAGTTGATCGGGACCCTCTTAAAGATGTAATGGACAATGTTGATGCTGTGGATTGGAGTGTAAAAGGCAAATTGGTTGCTGTGGCAAAAAAAAGTGTGATTAGCATCCTGTCATCAAAATTCAGGATAAAGTTGAGCATGTCGCTATCATTGAATTCTCTGGTTGGTGATTCAGATGTGGACTGCACTATAAAAGGATGCTTTCAAGTAAACGCTGATGGACAGGAGGAAAATTACCTGGTCCTGGTCGTCACAAGCAAAGAGGGCAAAATCACCAAGGCCTCCACGCCGATTGTGCTATCATTCAGTGATGTGTTTCTAGCTCTCATTGATGATGCTGCTCCCTTTGCAAGTGGACCACATATGTTCTTGAATTATTTGGATCAATGCAAGATAGCATTCACCGCTAACAGAAAGAATATTGTTCAGCATATTGTTTTGTTTGGTTGGGAACTTAATGACAACGAGAATGAAGCTGCGATGATGGAGATTCTGGATGACGCATGGTGTCCAAGAATTGATTCTCAAGGTAATGGTGATGATAATTTGATCCTTGGACTTTGTGTTGACAAGGTTTCTCACGATGAGAGCATTGTACTCACCCTTGGAGATGAAGAGAAAGAAGTCTCCCCATGTTGTATTGTTCTGTGTGTTACTGTTGACGGCAAGCTTACTATTTTCCATTTCTTCAGTGCTGCAAGAGTTTTATCTCCAACACCAGACATTGTCTATGCCATTTCTGATGGCGAGGACGAGGATACTTCTCCCTCAGAATCTGGGCTGACAGAAATTTCTTCAACAGCGGAGGAATGTGTGGAAAAAGTTGTTTCCAGATTGCAGGAATCCAAGGAAGTGAAAGAGTATGAAGTTCACACAAAAAGAGGCGATGAGATTTCTATGAAGAAAGATCAACAGCCTCCTCTTGCTGTTGATCAGTCGTTGATGGTTAGTCCTGCCAATAATATAAAAAAACCCTCTGGTGAATCTACTTCTGGAAGCAAGGATGAGGATACTTCTCCCTCAGATTCCGGGCTGACCGAAATTTCTTCAAAAGCGGAGGAACGCGTGGAAAAAGTTGTTTCCAGATTGCAGCAATCCAAGGAAGTGAAAGAGTATGAAGTTCACACAAAAGGTGATGATATTTCTATGAAGAAAGATCAACAGCCTCCTCTTGCTGTTGATCAGTCGTTGATGGTCAGTCCTGCCAATAATATAAAAAAACCCTCAGGTGAATCTACTTGTGGAAGCAAAGAAGTGAGTCCTCCTGCAAATTTGAAGACATTTAAAGGAGGTGATGATGACCAACAAAAAGTTCCTGGTGAAACGCTGAACCAAGATAGAGATGTCCAACAGCTATTTTCAGGCACAAATTTGGAACGTAATTCCTTGTCAATGAAATCTCACCATGATGATCCTCCTGGGCCTGCGATTCGAGATTTTAGCAAGACTGATACTCAAAAACTTGAAGCTCGACCAGGAAAACTAGGGTCAAGTAGTTTGCAGTGTGTGTCATCACAATCCTGGCCAAGCGGAAAGTTCTTTACTTCAGAAACTACTAACGACGGAAGGTCCTCACAAAGGAATCAGTCTGATAATTCTGCTACATCGATTTTGAGTACTGGACAGTTTCCTGGCGGTCCACTTCAAAATCCTTTTCATTCAAAGGAGTTTTCTGGTCCATCATCAACTTCAGTCCATCCTTCACATGGGAACCGGACAACAGCAGGGCTTGGCAATATCCAATCATTGCCTGCTGTTCATAGCTCGCAAGTGTCATTGCAGGAAAATCTTACATCAGGAAGGTCTTCTTTCAATTATAAGCCTCATTCTAACAAGGAGAACTTCAGAACTCCCTTGCCAACAGTGCCGCTGAATTATGAGCCAAACCTGTCAAAACAATTTCTAAATGTAAGTCAATTGTATTTTGTTAATTCTAGGAATGGTGGTGATGTTTGTCGCCGTTCGAGAGAGAGAGACAGAGATGGAGTCTTGTGCTGGAGAGTTCTTGCTGGACACCGTTCTTTTATTGAAGCATATGTACATATCCCAAGGAAGGATTGTGTCTCAGTCTCTAATTTTCTTCAGGTTGAGGAGATGGCCAAAGAACTGGATATGCTCCTGGAATGTATTGAAGGAGTAGGTGGTTTCAAGGATACCTCCATTGCTCTCCAGAAAAGCTCAGTTGTAGCTCTAGAGGAAGGCATATGGACTCTTTCTGAAAGATGCAGAATGTGGAGGGGCATAATGGATGAACGGCATGGGAAGATCCAACTTCTTCTTGATAAGACAGTGGAAGGTATAGTTTGTGTTGCCGTCAATCAAGTGACATGGATAGGCCGTTCAATAATTTCATTGTGA

Network for GWHGAAZE008717

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14317	NUP214, CAN	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.615
	SRR3591706	second leaf	2.889
	SRR3591707	mature leaf	2.385
	SRR3591708	Shoot apex	6.787
	SRR3591709	Stem	5.961
	SRR3591710	White floral bud	7.282
	SRR3591711	White flower	8.561
	SRR3591712	Green floral bud	7.773
	SRR3591713	Yellow flower	3.069
SRP173429	SRR8316895	Juvenile bud stage	5.289
	SRR8316896	Juvenile bud stage	5.671
	SRR8316897	Juvenile bud stage	2.498
	SRR8316894	Third green stage	3.112
	SRR8316900	Third green stage	6.137
	SRR8316901	Third green stage	5.285
	SRR8316898	Complete white stage	1.541
	SRR8316899	Complete white stage	4.973
	SRR8316903	Complete white stage	3.574
	SRR8316902	Silver flowering stage	1.155
	SRR8316904	Silver flowering stage	3.964
	SRR8316905	Silver flowering stage	1.062
	SRR8316906	Gold flowering stage	4.381
	SRR8316907	Gold flowering stage	2.775
	SRR8316908	Gold flowering stage	3.048
SRP132670	SRR6706286	Control	2.799
	SRR6706287	Light intensity 50%	3.032
	SRR6706288	Light intensity 20%	3.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.367
	CNS0095593	Slightly white alabastrum(diploid) 2	1.548
	CNS0095594	Slightly white alabastrum(diploid) 3	1.229
	CNS0095595	Whole white alabastrum(diploid) 2	1.420
	CNS0095596	Whole white alabastrum(diploid) 3	1.458
	CNS0095597	Whole white alabastrum(diploid) 4	1.649
	CNS0095598	Silvery flower (diploied) 1	3.714
	CNS0095599	Silvery flower (diploied) 2	3.430
	CNS0095600	Silvery flower (diploied) 3	7.627
	CNS0095601	Golden flower (diploid) 1	2.667
	CNS0095602	Golden flower (diploid) 2	7.619
	CNS0095603	Golden flower (diploid) 3	7.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.448
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.680
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.973
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.377
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.141
	CNS0095610	Silvery flower (tetraploid) 1	5.133
	CNS0095611	Silvery flower (tetraploid) 2	6.964
	CNS0095612	Silvery flower (tetraploid) 3	3.177
	CNS0095613	Golden flower (tetraploid) 1	1.319
	CNS0095614	Golden flower (tetraploid) 2	2.783
	CNS0095615	Golden flower (tetraploid) 3	2.204
CRA001975	CRR073297	Stem 1	8.527
	CRR073298	Stem 2	7.050
	CRR073299	Stem 3	4.651
	CRR073300	Leaf 1	6.700
	CRR073301	Leaf 2	4.480
	CRR073302	Leaf 3	5.113
	CRR073303	Juvenile bud 1	4.430
	CRR073304	Juvenile bud 2	2.287
	CRR073305	Juvenile bud 3	6.860
	CRR073306	Third green 1	0.881
	CRR073307	Third green 2	0.766
	CRR073308	Third green 3	0.977
	CRR073309	Second white 1	1.249
	CRR073310	Second white 2	1.487
	CRR073311	Second white 3	2.124
	CRR073312	Silver flowering 1	1.240
	CRR073313	Silver flowering 2	1.801
	CRR073314	Silver flowering 3	1.412
	CRR073315	Gold flowering 1	1.273
	CRR073316	Gold flowering 2	3.431
	CRR073317	Gold flowering 3	2.561
	CRR073318	Tawny withering 1	2.688
	CRR073319	Tawny withering 2	1.930
	CRR073320	Tawny withering 3	1.788