Gene detail

Detail information of GWHGAAZE008737

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI17575.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZU29\|PP139_ARATH	0	Pentatricopeptide repeat-containing protein At2g01390
trEMBL	tr\|F6GWZ7\|F6GWZ7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44483.1}
TAIR10	AT2G01390.1	1E-165	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	89611614	89613781	+
GWHAAZE00000002	mRNA	89611614	89613781	+
GWHAAZE00000002	exon	89611614	89612220	+
GWHAAZE00000002	exon	89612733	89613781	+
GWHAAZE00000002	CDS	89611614	89612220	+
GWHAAZE00000002	CDS	89612733	89613781	+

Transcript Sequence
>GWHTAAZE008747 ATGAAGAAATCTGTGAAGTCATTTAAGAAAAAAGAAGTAGACCCCAAAGTGTACATGAGGGATACTGTTAGGAACATTTCAAACATACTGAGGTATTCAACTTGGGATTCTGCTCAAGAACAGTTAGAGAAACTCCCTTTAAGATGGGATTCTTACACAATCAATCAAGTTCTCAAAACCCATCCCCCGTTGGAAAAGGCATGGTTGTTCTTCAATTGGGCCTCTCGGCTAAGAGGGTTTAAGCACGATCAGTTTACTTATACTACCATGTTGGATATTTTTGGTGAAGCCAGGAGGATTTCGTCGATGAACCATGTTTTCAAGAAAATGCAAGAGAAAGATATCAAGATTGATGCAGTTACGTACACTTCACTTATACATTGGCTTTCGAATGACGGGGATATTGATGGGGCAGTGAAGATGTGGAAGGAGATGAAAGATAAGGGCTGTAATCCAACGGTTGTTTCTTACACTGCTTATATGAAGGTTTTATTTGATCACAATAGAGTGAAAGAGGCTACTGCTATCTACAAGGAGATGATTCAATCTGGATGCTCACCCAATTGCCACACTTACACGGTGTTAATGGTGCATCTTGCTAGTTCTGGTTTTTATCAGATGGATAATAATTCACTCAAATGGGTTTCAGGAAAGTTCTATGAACTTGTGGAGATCTTTAGCAAAATGCAAGAAACTGGGGTACAACCTGATAAAGCTACGTGCAACATTCTGGTTGACAAATGCTGCAAAGTAGGAGAAACAGGTGCGATGATGAAGATTCTTCAGTATATGAAAGAGAACTCCTTCGTTCTTCGTTATCCTGTATATATGGAAGCCCTTGAAACTTTGAGAATCGCTGGCAAAAGTGATGTTCTCCTTAAGCAGGTTAATCCTCATATTTCAGTAAAATTCATTAATCATGAGGAGAAAAATAACTTCGATGCAACTACTACCGATAGTCACTCCATTATAGATCAAGGGCTTGTTCTAAATATGCTTGCCAGGCATAATTTTGTAGCAGTTGACCGCTTACTTGCCGATATGATGGATAAGAATATTCAATTACACTCCAAGATTATCTCATCCATTATTGAGGTATACAGTGCACATTCAAGACCAAAAAGTGCTTCTTTGGCCTTTGAGTACAGTCTAAAAATGGGCCTAAGTTTTGAGAAAACTTCATATCTCACCTTGATAGGTGTATTCATCAGAACAAATTCATTCCCAAAGATTGTGGAGATAATTGAGGCAATGTTTAATGCTGGATTTGCAGTCGGAACGCATCTAAGTGCCCTCTTAATCTATAGGCTTGGCCGCGTTAGAAAATTAGGTTTGGCCACAAAACTATTTCAATTATTGCCCAGTGAACAGAGGAGCACGTCCGCTTACACTGCCTTGATGGGTGCCTACTTCTCTATCGGGAAAGTGGAAAAGGGACTTGAAACGTTTAATGAAATGAGATCAAATGGGATTTGTGTTGCTTTAGGAACATACAACGTGTTGTTAGCGGGTCTTGAGAAACATGGCAAAGTAACCGAGGTAGAATCTTATAGGAAGGAGAAAAAGAGATTGCAAACTGGTGGCTCATCCCAACTTGGTGTTCCTATGGATGAAAAGATTTGTAATATACTTTTTGCGGGGGATGTGGTGTCTTGA

Network for GWHGAAZE008737

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0059

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13812.7	PPR_3	106	164	4.90E-14
PF17177.5	PPR_long	168	310	5.10E-07
PF13041.7	PPR_2	459	505	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.907
	SRR3591706	second leaf	3.932
	SRR3591707	mature leaf	5.590
	SRR3591708	Shoot apex	9.369
	SRR3591709	Stem	8.519
	SRR3591710	White floral bud	4.217
	SRR3591711	White flower	4.635
	SRR3591712	Green floral bud	4.241
	SRR3591713	Yellow flower	4.040
SRP173429	SRR8316895	Juvenile bud stage	2.027
	SRR8316896	Juvenile bud stage	2.392
	SRR8316897	Juvenile bud stage	1.298
	SRR8316894	Third green stage	1.048
	SRR8316900	Third green stage	2.116
	SRR8316901	Third green stage	1.953
	SRR8316898	Complete white stage	0.667
	SRR8316899	Complete white stage	2.712
	SRR8316903	Complete white stage	1.432
	SRR8316902	Silver flowering stage	0.874
	SRR8316904	Silver flowering stage	2.010
	SRR8316905	Silver flowering stage	0.443
	SRR8316906	Gold flowering stage	1.975
	SRR8316907	Gold flowering stage	1.359
	SRR8316908	Gold flowering stage	0.888
SRP132670	SRR6706286	Control	0.972
	SRR6706287	Light intensity 50%	1.118
	SRR6706288	Light intensity 20%	1.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.941
	CNS0095593	Slightly white alabastrum(diploid) 2	1.380
	CNS0095594	Slightly white alabastrum(diploid) 3	1.129
	CNS0095595	Whole white alabastrum(diploid) 2	1.696
	CNS0095596	Whole white alabastrum(diploid) 3	1.321
	CNS0095597	Whole white alabastrum(diploid) 4	2.978
	CNS0095598	Silvery flower (diploied) 1	2.104
	CNS0095599	Silvery flower (diploied) 2	1.259
	CNS0095600	Silvery flower (diploied) 3	1.393
	CNS0095601	Golden flower (diploid) 1	1.341
	CNS0095602	Golden flower (diploid) 2	2.021
	CNS0095603	Golden flower (diploid) 3	2.413
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.412
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.266
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.875
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.887
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.038
	CNS0095610	Silvery flower (tetraploid) 1	6.843
	CNS0095611	Silvery flower (tetraploid) 2	5.401
	CNS0095612	Silvery flower (tetraploid) 3	5.564
	CNS0095613	Golden flower (tetraploid) 1	2.688
	CNS0095614	Golden flower (tetraploid) 2	5.453
	CNS0095615	Golden flower (tetraploid) 3	4.672
CRA001975	CRR073297	Stem 1	1.386
	CRR073298	Stem 2	1.459
	CRR073299	Stem 3	1.073
	CRR073300	Leaf 1	1.436
	CRR073301	Leaf 2	0.904
	CRR073302	Leaf 3	0.475
	CRR073303	Juvenile bud 1	0.453
	CRR073304	Juvenile bud 2	0.244
	CRR073305	Juvenile bud 3	0.503
	CRR073306	Third green 1	0.194
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.130
	CRR073309	Second white 1	0.226
	CRR073310	Second white 2	0.338
	CRR073311	Second white 3	0.508
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.115
	CRR073314	Silver flowering 3	0.160
	CRR073315	Gold flowering 1	0.135
	CRR073316	Gold flowering 2	1.170
	CRR073317	Gold flowering 3	0.203
	CRR073318	Tawny withering 1	0.894
	CRR073319	Tawny withering 2	0.955
	CRR073320	Tawny withering 3	0.209