Gene detail

Detail information of GWHGAAZE008760

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004251234.1	PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Solanum lycopersicum]
Swissprot	tr\|Q94AD8\|FBW3_ARATH	F-box/WD-40 repeat-containing protein At5g21040
trEMBL	tr\|K4DAR2\|K4DAR2_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g072050.1.1}
TAIR10	AT5G21040.2	F-box protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	90583060	90584724	+
GWHAAZE00000002	mRNA	90583060	90584724	+
GWHAAZE00000002	exon	90583060	90584724	+
GWHAAZE00000002	CDS	90583060	90584724	+

Transcript Sequence
>GWHTAAZE008770 ATGGCATTTGAATGCCAAGGAGGTACTGAGATTGGTTTGACTAAGAATTCATTGGATAGTATAGATAATTCAGGCACACAAATTGGTTTTAATCAGATTAGTTCCACTAGTCATAGAAAGAGTTTAACAGTGGATTCGAAAACCGGAATTGGGGGCTCTGAAAAATCAAAGAACATTTTAGAAGATTTTCCCATTAAAGGGATTGGGACCCCGTTTTGTGCTAAATCATCACCGGTGAATGAGGTTTTATCTAACTACGGTCGATCAATAATCGATCTTCCTCCAGCATTGATATCTGAGATACTTAATTTTCTTGATCCTAAAGAGCTTGGTATAGTATCCTGTGTCTCATCGTCTCTGTATAGGCTCGCATCCGAGCTCCATGTTTGGAAGGAGTTCTATTGCGAGAGATGGGGGATTCCTATATCCCAAACACCTCTTGTTTCGGACCTTTCGGATGAGAAATCGTGGAAGGAACTGTTTGTGGAGAGGGAATTTCGTAGCAAGACGTTTTTGGGCCGTTATAGCATCGATAGCCTTTATGGTCACAGTGAAGCTGTACGAGCCGTTTTTCTTCTTGCTTCTAAGAAGCTTATTTTCACTTCGGGGTATGATTCAATTGTTCGAGTGTGGGACATGGAGGAAGGGTTGTCAATTGCTTCGTCTAAGCCACTTGGTTGTACTATTCGAGCTGTTGCAGCAGATACAAAGCTCTTGATTGCAGGTGGTACCGATGGGTTCATACATGGTTGGAGGGCCGAGGAAGGGCACCCGTATCTGTTTGACCTTAGTTCCCAAAACCAGACCAAAGAGTTCCGTCTTTGGGAACATGAAGGGCCTATAACATGCCTCGCACTTGATCTTACTAGAATCTATAGTGGTTCATGGGACATGAGTATACGTGTTTGGGACCGCTCTTTGATGAAATGCGTGAAGATCTTGATGCACAATGACTGGGTTTGGAGCCTTGTTCCTCACGATACTACCGTGGTCAGCACGTCGGGTTCAGATGTATATGTTTGGGACACTAATAGTGGGACCCCACTTGCGATGATCAACAATGCCCATGTGGGTAACACTTATTCACTGGCACGAAGCCACACTGGGAATCTCCTTTTCACTGGGGGAGAAGACGGAGTGATACACATGTTTGAGATCGCCGATCGAATCTCAGGTAATGTTCGTCGGGTTTCGACATGGATTCCTCATACGGGTCCCATTTATTCTCTTGCCTTTGAGTTTCCATGGCTAGTTTCAGCTTCAAGTGACGGCAAGCTTTCGCTTATTGATGTGAGAAAGCTGTTGAAGACTGGTAAGCATATTTCCATGGAGAATCTTTCGAGGGTTGACCCAAAGAAAGTGGAGCCCCCACAAAGGGTGCTACACGGGTTTGGGTGTAACTTGTTTTCGGTGGACATTGGTATGGACCGTATTGTATGTGGAGGCGAAGAAGGGGTTGTTAGGGTTTGGAACTTTTCGCAAGCTTTGGAGATTGAGCGGAGAGTCCGTGCTTTGAAGGGAATAAGGTTAGAGCATAGGATGAGGCGGCGTAAGCTACAAACAGATATGAACAGTAAAGGTGGCCGGTCTGGCCAATTTCCCCCCGGAGCAAAGATGAACCAAATGAACGGCGATAGGAATGGCGTGTATCAAGCGCGGGATTAG

Network for GWHGAAZE008760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	89	134	5.30E-07
PF00400.33	WD40	178	212	0.025
PF00400.33	WD40	273	304	0.0025

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.763
	SRR3591706	second leaf	11.339
	SRR3591707	mature leaf	18.107
	SRR3591708	Shoot apex	15.516
	SRR3591709	Stem	17.090
	SRR3591710	White floral bud	27.042
	SRR3591711	White flower	30.492
	SRR3591712	Green floral bud	21.255
	SRR3591713	Yellow flower	26.320
SRP173429	SRR8316895	Juvenile bud stage	8.833
	SRR8316896	Juvenile bud stage	13.702
	SRR8316897	Juvenile bud stage	5.080
	SRR8316894	Third green stage	5.378
	SRR8316900	Third green stage	16.627
	SRR8316901	Third green stage	15.932
	SRR8316898	Complete white stage	7.930
	SRR8316899	Complete white stage	22.687
	SRR8316903	Complete white stage	14.460
	SRR8316902	Silver flowering stage	9.429
	SRR8316904	Silver flowering stage	9.506
	SRR8316905	Silver flowering stage	5.809
	SRR8316906	Gold flowering stage	19.338
	SRR8316907	Gold flowering stage	17.606
	SRR8316908	Gold flowering stage	22.166
SRP132670	SRR6706286	Control	18.384
	SRR6706287	Light intensity 50%	17.991
	SRR6706288	Light intensity 20%	17.297
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.110
	CNS0095593	Slightly white alabastrum(diploid) 2	12.357
	CNS0095594	Slightly white alabastrum(diploid) 3	15.672
	CNS0095595	Whole white alabastrum(diploid) 2	14.488
	CNS0095596	Whole white alabastrum(diploid) 3	14.162
	CNS0095597	Whole white alabastrum(diploid) 4	13.127
	CNS0095598	Silvery flower (diploied) 1	18.504
	CNS0095599	Silvery flower (diploied) 2	15.288
	CNS0095600	Silvery flower (diploied) 3	23.784
	CNS0095601	Golden flower (diploid) 1	17.780
	CNS0095602	Golden flower (diploid) 2	28.088
	CNS0095603	Golden flower (diploid) 3	27.253
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.563
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.308
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.661
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.790
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.502
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.806
	CNS0095610	Silvery flower (tetraploid) 1	26.015
	CNS0095611	Silvery flower (tetraploid) 2	22.712
	CNS0095612	Silvery flower (tetraploid) 3	29.209
	CNS0095613	Golden flower (tetraploid) 1	26.670
	CNS0095614	Golden flower (tetraploid) 2	25.794
	CNS0095615	Golden flower (tetraploid) 3	36.737
CRA001975	CRR073297	Stem 1	23.826
	CRR073298	Stem 2	19.615
	CRR073299	Stem 3	21.848
	CRR073300	Leaf 1	22.171
	CRR073301	Leaf 2	18.877
	CRR073302	Leaf 3	16.840
	CRR073303	Juvenile bud 1	16.690
	CRR073304	Juvenile bud 2	16.677
	CRR073305	Juvenile bud 3	21.864
	CRR073306	Third green 1	30.749
	CRR073307	Third green 2	24.352
	CRR073308	Third green 3	26.243
	CRR073309	Second white 1	28.249
	CRR073310	Second white 2	22.394
	CRR073311	Second white 3	31.434
	CRR073312	Silver flowering 1	32.223
	CRR073313	Silver flowering 2	33.826
	CRR073314	Silver flowering 3	27.649
	CRR073315	Gold flowering 1	22.967
	CRR073316	Gold flowering 2	24.495
	CRR073317	Gold flowering 3	22.274
	CRR073318	Tawny withering 1	18.372
	CRR073319	Tawny withering 2	14.208
	CRR073320	Tawny withering 3	16.307