Detail information of GWHGAAZE008762


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP13855.13.3321E-174unnamed protein product [Coffea canephora]
Swissprottr|Q9CA67|CHLP_ARATH8E-134Geranylgeranyl diphosphate reductase, chloroplastic (Precursor)
trEMBLtr|A0A068UZ88|A0A068UZ88_COFCA1E-174Coffea canephora DH200=94 genomic scaffold, scaffold_77 {ECO:0000313|EMBL:CDP13855.1}
TAIR10AT1G74470.18E-103Pyridine nucleotide-disulphide oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9059835590599197+
GWHAAZE00000002mRNA9059835590599197+
GWHAAZE00000002exon9059835590599197+
GWHAAZE00000002CDS9059835590599197+
Transcript Sequence

Network for GWHGAAZE008762

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K10960chlP, bchP Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.047
SRR3591706second leaf0.697
SRR3591707mature leaf2.507
SRR3591708Shoot apex5.571
SRR3591709Stem1.248
SRR3591710White floral bud8.269
SRR3591711White flower1.835
SRR3591712Green floral bud12.430
SRR3591713Yellow flower0.910
SRP173429 SRR8316895Juvenile bud stage 1.119
SRR8316896Juvenile bud stage 1.699
SRR8316897Juvenile bud stage 0.658
SRR8316894Third green stage 0.787
SRR8316900Third green stage 3.077
SRR8316901Third green stage 3.553
SRR8316898Complete white stage 0.554
SRR8316899Complete white stage 3.526
SRR8316903Complete white stage 0.890
SRR8316902Silver flowering stage0.304
SRR8316904Silver flowering stage0.406
SRR8316905Silver flowering stage0.195
SRR8316906Gold flowering stage 0.144
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.625
SRP132670SRR6706286Control3.093
SRR6706287Light intensity 50%3.707
SRR6706288Light intensity 20%3.550
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.316
CNS0095593Slightly white alabastrum(diploid) 25.450
CNS0095594Slightly white alabastrum(diploid) 34.811
CNS0095595Whole white alabastrum(diploid) 24.623
CNS0095596Whole white alabastrum(diploid) 36.124
CNS0095597Whole white alabastrum(diploid) 45.440
CNS0095598Silvery flower (diploied) 10.268
CNS0095599Silvery flower (diploied) 20.101
CNS0095600Silvery flower (diploied) 30.231
CNS0095601Golden flower (diploid) 10.854
CNS0095602Golden flower (diploid) 21.163
CNS0095603Golden flower (diploid) 30.368
CNS0095604Slightly white alabastrum(tetraploid) 15.256
CNS0095605Slightly white alabastrum(tetraploid) 25.646
CNS0095606Slightly white alabastrum(tetraploid) 36.014
CNS0095607Whole white alabastrum(tetraploid) 14.505
CNS0095608Whole white alabastrum(tetraploid) 24.488
CNS0095609Whole white alabastrum(tetraploid) 36.247
CNS0095610Silvery flower (tetraploid) 10.694
CNS0095611Silvery flower (tetraploid) 20.795
CNS0095612Silvery flower (tetraploid) 30.731
CNS0095613Golden flower (tetraploid) 10.666
CNS0095614Golden flower (tetraploid) 21.611
CNS0095615Golden flower (tetraploid) 30.148
CRA001975CRR073297Stem 12.585
CRR073298Stem 21.800
CRR073299Stem 32.535
CRR073300Leaf 12.796
CRR073301Leaf 22.834
CRR073302Leaf 33.673
CRR073303Juvenile bud 12.413
CRR073304Juvenile bud 21.909
CRR073305Juvenile bud 32.328
CRR073306Third green 10.932
CRR073307Third green 21.535
CRR073308Third green 31.254
CRR073309Second white 10.000
CRR073310Second white 20.275
CRR073311Second white 30.000
CRR073312Silver flowering 10.226
CRR073313Silver flowering 20.101
CRR073314Silver flowering 30.059
CRR073315Gold flowering 10.106
CRR073316Gold flowering 20.889
CRR073317Gold flowering 30.050
CRR073318Tawny withering 11.583
CRR073319Tawny withering 21.027
CRR073320Tawny withering 32.669