Gene detail

Detail information of GWHGAAZE008783

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656899.1	0	PREDICTED: APO protein 3, mitochondrial-like [Vitis vinifera]
Swissprot	tr\|Q9FH50\|APO3_ARATH	1E-100	APO protein 3, mitochondrial (Precursor)
trEMBL	tr\|D7SQI0\|D7SQI0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17911.3}
TAIR10	AT5G61930.2	4E-84	Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	91600897	91602881	-
GWHAAZE00000002	mRNA	91600897	91602881	-
GWHAAZE00000002	exon	91600897	91601549	-
GWHAAZE00000002	exon	91601968	91602398	-
GWHAAZE00000002	exon	91602553	91602881	-
GWHAAZE00000002	CDS	91602553	91602881	-
GWHAAZE00000002	CDS	91601968	91602398	-
GWHAAZE00000002	CDS	91601137	91601549	-
GWHAAZE00000002	three_prime_UTR	91600897	91601136	-

Transcript Sequence
>GWHTAAZE008793 ATGTTCTTACAAAGCTACGACGTGAAACTAAATAAACCACCTCATCTTTGTGCATTGTTTTCGTCTGGGTCTACTTGTGTGGAGTTGCCAAGGAAGCTAATCAAGTCTGAGAGGAAGCCAATGGTGACGAGTGTCAACCAACTTAAGCGACAAGCTAGATTGGAAAAGCGTAAGAGGCTCACAGTGAAAGAGGTTACGCTAACTCCTCCTGAGAATGGGCTATTGGTCAAAAGATTAATCCTAATTGCTCATCAAGTTTTAGCTGCCAGAGCCCAATTATTCCCTAGTCTTTCAAGGGCTGTCGCAAGCATTCCTGTTTACTCATGCAGCTTGTGTGGAGAAGTTCATGTAGGCCATCCACCGCATAAGATCAAAACTTGCAATGTCACTGGTAGCCCAAAGAGCAAGGAGCATGTTTGGGAAAGAGGAGGAATGGAACATGTTTTGCCTGTAGTGGAATCTTTTCATTTGTATGACAGGATAGGGAGAGCTGTGACACATAACGAACGACTCCTAGTTGATCGGATCCCAGCAATTGTAGAATTGTGCATCCAAGCAGGGGTGGACATCCCTGAGTACCCGGTTAGGAGAAGAGACTTTCCTGTCTACCAAGTTGCTGGGAGAATGATGGATTTTGAGCGCAGGTTTCCACATAATAATTCGTCCATAAAAGAAGTTAACACGTATGGGTTTTGGGGGAACAAAAGGAAGTTGATTGAAGACAAGAAATCTTTGAGTTTGCCTTACAATGATATACAAGGTTTTGCCACGAGGGGCATGGAAGCGTGGGAGAAGATGCGTGCAGGAGCCATAACACTAATGAAGAAATACAGTGTCCAAACATGCGGATATTGCTCAGAGGTACAAGTGGGGCCAATGGGTCATAGGGTGAGGCAATGTTATGCGTACAAGCACCAGATGAGGGATGGACAACACGCTTGGCAGGAAGCAACTATTGATGATTTGATCCCACCAGTGTACGTGTGGCATGTACAAGATCCACAATATCATCCTGAGCCGTTAGTGGATGGTTTAAGAAGGTACTACGGAAAGTTGCCCGCTGTTGTGGAGCTGTTTGCACAAGCTGGAGCGCGTGTGGGAGATGGTTACAGCAAGGTGATGAGAGAAGACATTGCGGTGCCTGAATTGAATGAAGAGAAATTGGTTGTATGAAACTATAATATATAATTTATTTATTTTCTTCCATCTAAACCGACTATAGTCATTAAGGTGTATATGGTCACTTGAAGCATTTAGACTCAAATTAAAGGGGAAATGAGGCAATCGGAGATCATAGAGGCTTGATCTTTATTGGGTGAGTTCATGTTTTTATGAAACTTATGTCCTGTTGGGGGAAAATGAAGTAGAAAGAGTTAATAAGAGAAGCTCTTTTCCTTGAATTGAAGGAGGCAC

Network for GWHGAAZE008783

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05634.12	APO_RNA-bind	26	211	1.80E-60
PF05634.12	APO_RNA-bind	255	368	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.510
	SRR3591706	second leaf	16.412
	SRR3591707	mature leaf	17.162
	SRR3591708	Shoot apex	25.171
	SRR3591709	Stem	39.002
	SRR3591710	White floral bud	17.156
	SRR3591711	White flower	17.618
	SRR3591712	Green floral bud	18.356
	SRR3591713	Yellow flower	14.316
SRP173429	SRR8316895	Juvenile bud stage	23.730
	SRR8316896	Juvenile bud stage	44.131
	SRR8316897	Juvenile bud stage	17.154
	SRR8316894	Third green stage	15.094
	SRR8316900	Third green stage	41.061
	SRR8316901	Third green stage	50.081
	SRR8316898	Complete white stage	22.045
	SRR8316899	Complete white stage	53.244
	SRR8316903	Complete white stage	36.704
	SRR8316902	Silver flowering stage	17.124
	SRR8316904	Silver flowering stage	23.476
	SRR8316905	Silver flowering stage	12.797
	SRR8316906	Gold flowering stage	41.539
	SRR8316907	Gold flowering stage	37.284
	SRR8316908	Gold flowering stage	36.161
SRP132670	SRR6706286	Control	43.255
	SRR6706287	Light intensity 50%	45.310
	SRR6706288	Light intensity 20%	48.176
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.807
	CNS0095593	Slightly white alabastrum(diploid) 2	39.202
	CNS0095594	Slightly white alabastrum(diploid) 3	38.634
	CNS0095595	Whole white alabastrum(diploid) 2	36.747
	CNS0095596	Whole white alabastrum(diploid) 3	38.684
	CNS0095597	Whole white alabastrum(diploid) 4	40.170
	CNS0095598	Silvery flower (diploied) 1	31.061
	CNS0095599	Silvery flower (diploied) 2	24.083
	CNS0095600	Silvery flower (diploied) 3	22.637
	CNS0095601	Golden flower (diploid) 1	28.069
	CNS0095602	Golden flower (diploid) 2	18.602
	CNS0095603	Golden flower (diploid) 3	18.992
	CNS0095604	Slightly white alabastrum(tetraploid) 1	97.940
	CNS0095605	Slightly white alabastrum(tetraploid) 2	94.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	104.528
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.950
	CNS0095608	Whole white alabastrum(tetraploid) 2	74.798
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.796
	CNS0095610	Silvery flower (tetraploid) 1	77.076
	CNS0095611	Silvery flower (tetraploid) 2	53.149
	CNS0095612	Silvery flower (tetraploid) 3	56.750
	CNS0095613	Golden flower (tetraploid) 1	54.161
	CNS0095614	Golden flower (tetraploid) 2	66.613
	CNS0095615	Golden flower (tetraploid) 3	40.759
CRA001975	CRR073297	Stem 1	38.787
	CRR073298	Stem 2	31.320
	CRR073299	Stem 3	13.682
	CRR073300	Leaf 1	47.269
	CRR073301	Leaf 2	49.439
	CRR073302	Leaf 3	17.803
	CRR073303	Juvenile bud 1	21.609
	CRR073304	Juvenile bud 2	19.540
	CRR073305	Juvenile bud 3	15.378
	CRR073306	Third green 1	10.147
	CRR073307	Third green 2	8.083
	CRR073308	Third green 3	11.607
	CRR073309	Second white 1	5.195
	CRR073310	Second white 2	8.127
	CRR073311	Second white 3	5.097
	CRR073312	Silver flowering 1	3.550
	CRR073313	Silver flowering 2	4.779
	CRR073314	Silver flowering 3	2.619
	CRR073315	Gold flowering 1	5.382
	CRR073316	Gold flowering 2	9.829
	CRR073317	Gold flowering 3	3.257
	CRR073318	Tawny withering 1	17.032
	CRR073319	Tawny withering 2	19.625
	CRR073320	Tawny withering 3	15.687