Gene detail

Detail information of GWHGAAZE008804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	2.6903E-114	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-74	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	1E-63	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	92854689	92855810	+
GWHAAZE00000002	mRNA	92854689	92855810	+
GWHAAZE00000002	exon	92854689	92855810	+
GWHAAZE00000002	CDS	92854689	92855810	+

Transcript Sequence
>GWHTAAZE008814 ATGTCTGACATTCCTGAGGATGTTGTTGCCGACATACTATCGCGATTACCGGTGAAGTATCTTCTCCGATTCAGGTGCGTATCAAAACCATGGCGCGCCCTAATTGGCAGTGTTGATTTCATTAACTTGCATCTCAATCGTGCAAAAAATAACACTACAATCATTAGAAAGGGTTGTGAATGCCTCTATTCTATTAACTTGGATTCACTTGACAATGCTGTAACACTCAACTACCGCCAACTAAACCCTAATGAACAGAGCATCCTAGCAACTAAAATAGTAGGTTCTTGCAATGGGCTGCTCTGTTTGAACAACTCGGAGAAATACATTTTCTTGTGGAACCCAGCAACGAGAAAGTACCGGAAATCACCTGTTAGTAGGGTTCGGTTGGGGTTTCAATTTGTTGCTTTTGGATTTGGTTATGATGATGTTAGTGATGACTACAAAGTTGTGAGGATGGTACAATTTTATGGGGAGGATGCTAAACATTCATTTAGGTCTGAGGTTAGCATATACTCCATGAAACCTGATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACTTTACGTATGAGAGGGTCTCTGGTGTGCTTGCTAGTGGTGCTTTGCATTGGGTTGTTACTCGAAATCGTAGTAGTAGTGAGAATTTAATTGTTGCATTTGATCTTAGAACTGAGGAATATAGGTTGGTGCCACTGCCTCAATATTTGGATAAGAAGTTTCATATGAATGTGGATGTATTAGGAGGATGTCTGTGTGTGCTTTGTCACGTTGACTTGCTTTATGTTGAAATGTGGGTGATGGAGGATTATGGAGTCGAGAAATCATGGACCAAGTTAATTTCGGCTGCACAGGCCGAAATTATAAATTCCTTCAATGCTTTATTGCCTGTTGCATATTCCAAGAGCCGTGAGCAAGTGATTCTGTTAAAAGACTTTCGAAGGTTTATTTGGTACAACCTTACAACAAAAAGAGTTGTGAATATTGAGATTGATGGCATGCCATATTATTATGATTCAAGTGTTTGTTTTGAAAGCCTTGTTCGGCTCAGAGGTGGCGTTGAAGGTGCTGGGAGAATTGGGAAAAAGTTTCAAAAAATAGGTAAATTAATATCTCCGTAA

Network for GWHGAAZE008804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	39	2.60E-09
PF07734.14	FBA_1	197	292	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.089
	SRR3591706	second leaf	1.183
	SRR3591707	mature leaf	1.073
	SRR3591708	Shoot apex	1.737
	SRR3591709	Stem	0.897
	SRR3591710	White floral bud	1.039
	SRR3591711	White flower	1.362
	SRR3591712	Green floral bud	1.640
	SRR3591713	Yellow flower	0.889
SRP173429	SRR8316895	Juvenile bud stage	1.292
	SRR8316896	Juvenile bud stage	1.557
	SRR8316897	Juvenile bud stage	0.242
	SRR8316894	Third green stage	0.366
	SRR8316900	Third green stage	1.328
	SRR8316901	Third green stage	1.238
	SRR8316898	Complete white stage	0.307
	SRR8316899	Complete white stage	2.131
	SRR8316903	Complete white stage	0.640
	SRR8316902	Silver flowering stage	0.522
	SRR8316904	Silver flowering stage	0.618
	SRR8316905	Silver flowering stage	0.319
	SRR8316906	Gold flowering stage	0.802
	SRR8316907	Gold flowering stage	0.865
	SRR8316908	Gold flowering stage	0.442
SRP132670	SRR6706286	Control	0.713
	SRR6706287	Light intensity 50%	1.058
	SRR6706288	Light intensity 20%	1.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.935
	CNS0095593	Slightly white alabastrum(diploid) 2	0.883
	CNS0095594	Slightly white alabastrum(diploid) 3	1.219
	CNS0095595	Whole white alabastrum(diploid) 2	0.653
	CNS0095596	Whole white alabastrum(diploid) 3	0.430
	CNS0095597	Whole white alabastrum(diploid) 4	0.538
	CNS0095598	Silvery flower (diploied) 1	1.065
	CNS0095599	Silvery flower (diploied) 2	1.791
	CNS0095600	Silvery flower (diploied) 3	1.162
	CNS0095601	Golden flower (diploid) 1	1.209
	CNS0095602	Golden flower (diploid) 2	0.742
	CNS0095603	Golden flower (diploid) 3	1.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.350
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.253
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.524
	CNS0095610	Silvery flower (tetraploid) 1	0.174
	CNS0095611	Silvery flower (tetraploid) 2	0.490
	CNS0095612	Silvery flower (tetraploid) 3	0.564
	CNS0095613	Golden flower (tetraploid) 1	0.150
	CNS0095614	Golden flower (tetraploid) 2	0.233
	CNS0095615	Golden flower (tetraploid) 3	0.364
CRA001975	CRR073297	Stem 1	0.494
	CRR073298	Stem 2	1.004
	CRR073299	Stem 3	0.337
	CRR073300	Leaf 1	0.455
	CRR073301	Leaf 2	0.775
	CRR073302	Leaf 3	0.969
	CRR073303	Juvenile bud 1	0.153
	CRR073304	Juvenile bud 2	0.233
	CRR073305	Juvenile bud 3	0.204
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.125
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.035
	CRR073310	Second white 2	0.060
	CRR073311	Second white 3	0.084
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.061
	CRR073316	Gold flowering 2	0.442
	CRR073317	Gold flowering 3	0.097
	CRR073318	Tawny withering 1	0.654
	CRR073319	Tawny withering 2	0.181
	CRR073320	Tawny withering 3	0.265