Gene detail

Detail information of GWHGAAZE008809

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42900.1	0	hypothetical protein JCGZ_23842 [Jatropha curcas]
trEMBL	tr\|A0A067LEG1\|A0A067LEG1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42900.1}
TAIR10	AT2G27090.1	5E-178	Protein of unknown function (DUF630 and DUF632)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93050188	93057471	+
GWHAAZE00000002	mRNA	93050188	93057471	+
GWHAAZE00000002	exon	93050188	93050615	+
GWHAAZE00000002	exon	93050697	93051352	+
GWHAAZE00000002	exon	93051950	93052021	+
GWHAAZE00000002	exon	93053749	93053963	+
GWHAAZE00000002	exon	93055585	93055808	+
GWHAAZE00000002	exon	93056784	93057471	+
GWHAAZE00000002	CDS	93050188	93050615	+
GWHAAZE00000002	CDS	93050697	93051352	+
GWHAAZE00000002	CDS	93051950	93052021	+
GWHAAZE00000002	CDS	93053749	93053963	+
GWHAAZE00000002	CDS	93055585	93055808	+
GWHAAZE00000002	CDS	93056784	93057471	+

Transcript Sequence
>GWHTAAZE008819 ATGGGGGCTTCGAGCTCTAGATTAGAAGAAGACAAGGCTCTTCAGCTTTGTCGAGAAAGAAAGAAGTTTGTTAGACAAGCACTTGACGGTAGATGCTCACTAGCAGCTACCCATGTTACTTACATACATACCCTCAAAAATACCGGAACGGCTTTGAGGAGATTTGTTGAACCCGAAGCTCCAGTCGAATCTTCGTTATATACATCCACTAGTGCAACACCGGAGCCACTTGGATTAACCGAAAAGTCCCTTTCCCAATTCTCATTCTCTTCATCTCAACGTGTGGATGTAAATGAAAACCTTTCTCCATCACCTTCTCCTCCAACTTCTAGTCGTTACCAAACAAATCATATGAAATTTAGAGGCTCTTTTTCAAGAAAAGTTGAAGAAAACCGTCTATGCGGTTGTGGGTTCAGTGACTTCTTCAACTGGAGCACCAGCTTGGGATTATTCGAGCCATCCCACCCGATCGACAGTCATTTTTCTTCACAAGGACGGAAGAGAATTAAACCACGGTCGGAGACTTCTGATTACATAAGACGGCTTAGGGAAGAGGAGGGAATTCCAGATTTGGAAGATGAAGAAGAAAAGGTATCTTTTCATCAAAGGGAAGATTTTCAAGAATCGGAAGATGAATTTGATGAGCCTTCTACAGATACATTGGTTCGAACTTTTGAAAATGTTAATAGGGCTACCGATCAAACTGCTACGAGTGCTTCACCTGCCATACCCTCTGCAGAGAGTGTAGCATCGGAAACCGAGTTCTTGGATAGGGAAAAGAGCTATTCTCCTTATTTGTCACCATTAAGACCCTCATCTTCTGGGGTCGGATTTGCCAATGATGCAAAGACAACAGTGTCACCATTAAGATCCACATCCGCTGGAGTCGAATTTGCCAATGATGCAAAAACAACAGGGGCCCAAGAAGACGGCGTTGAAAATAAGGTTCCTCCCAAGGATTTATTTTCTAGCATGAAAGATATTGAGTATCTCTTTGCTAAAGCATCTGACTCTGGTAAAGAAGTTCCACGGATGCTTGAAGCAAACAAGTTTCACTTTCGTCCAATTTTCCCGGGGAAAGAACGTGGATCAATGCCTTCAACATTATTGAAATCGTGTTTCTCTTGTGGAGATGATCCAAGCCAAGTTCAAGAAGAGCCTGCTCAAACTACCACAAAGTACTTAACTTGGCATCGTACAACGTCATCTCGTTCATCATCATCCAGGAATCTTCCCGGCGTAGACCCAAAAGATGATATCGAGGAACTTACCTCTAGTCTCTTCGATAATTTCTGTATGAATGCTGGAAGTCATGCGTCAACCTTAGATAGGTTGTATGCATGGGAGAGGAAGCTTTACGATGAAGTCAAGGCTAGTGAGACAGTGAGAAAGGTGTATGAACAGAAGTGTAGATTTCTTAGACAGCTAGAATCACAAGGAGAAAGCTCCTACAAGATTGATAAAATCCGTGCTGTTGTCAAGGATCTACACTCAAGAATCAGGGTTGCTATTCATAGGATCGACTCGATATCGAAGAAAATTGAGGATTTAAGAGACCAAGAACTCCAGCCCCAGCTGGAGGAGTTGATTGAAGGGTTAAGGAAGATGTGGGAACAGATGTTCGAATGCCACAGGCTTCAATTCTGCATCATATCATCAGCATACACCAACACCAACGCCAAAATCTCCTTCCAATCTGACTCCCATCGCCAAATAACAATTCACCTCGAACACGAACTCCTATCTCTCGCTTCAAGCTTCAAAAGTTGGATCACTGCTCAAAAAACGTATGTTGCGGCCATAAACGGGTGGCTCTTCAAATGCGTCTCTCTTCAACAAAAATCCTCCAAGCGTAAACGAAGAAAGGATCCCCCGAACTTAAGATTCTACGGCCCACCTATATATGTGACTTGTGGGGAGTGGTTAGATAAGCTCGAGGCCTTGCCTTTTAAAGAAGTTTCAGATTCTATAAAGGGATTGGCTGCAGAAATTTCCCACCTTTTACCCCGCCAAGAAAAGAACCAAGTTAAGGGGACCAATCATCGTTCGAAAGTGTGGCAGGGGGCCGGCAGCAACAGTGACTTGAGGACTAATTTATTGAGGCAAGAGGAAGTTTCTGAGGACTGGTTAACAGGTTTTGATCGTGTTCGGTCAAGCTTGGTGGGTTTTCTTGGGCAGTTGAATAATTTCGCAGATTTGTCCGTGAAGATGTTTACGGATCTTCAAAAGAAAATTCAAGATGCAAAGCGTAGTTATGCCCATGGAAATTCTGGCCATAATTGA

Network for GWHGAAZE008809

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0048

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04783.13	DUF630	1	59	6.20E-23
PF04782.13	DUF632	321	665	2.30E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.154
	SRR3591706	second leaf	9.635
	SRR3591707	mature leaf	13.727
	SRR3591708	Shoot apex	8.603
	SRR3591709	Stem	38.036
	SRR3591710	White floral bud	22.631
	SRR3591711	White flower	31.091
	SRR3591712	Green floral bud	25.965
	SRR3591713	Yellow flower	28.634
SRP173429	SRR8316895	Juvenile bud stage	10.945
	SRR8316896	Juvenile bud stage	12.931
	SRR8316897	Juvenile bud stage	8.138
	SRR8316894	Third green stage	7.053
	SRR8316900	Third green stage	19.539
	SRR8316901	Third green stage	23.887
	SRR8316898	Complete white stage	9.243
	SRR8316899	Complete white stage	34.598
	SRR8316903	Complete white stage	17.573
	SRR8316902	Silver flowering stage	12.929
	SRR8316904	Silver flowering stage	15.084
	SRR8316905	Silver flowering stage	6.799
	SRR8316906	Gold flowering stage	28.099
	SRR8316907	Gold flowering stage	23.769
	SRR8316908	Gold flowering stage	27.812
SRP132670	SRR6706286	Control	23.389
	SRR6706287	Light intensity 50%	21.417
	SRR6706288	Light intensity 20%	20.722
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.026
	CNS0095593	Slightly white alabastrum(diploid) 2	14.371
	CNS0095594	Slightly white alabastrum(diploid) 3	13.823
	CNS0095595	Whole white alabastrum(diploid) 2	13.114
	CNS0095596	Whole white alabastrum(diploid) 3	12.041
	CNS0095597	Whole white alabastrum(diploid) 4	10.424
	CNS0095598	Silvery flower (diploied) 1	14.600
	CNS0095599	Silvery flower (diploied) 2	12.124
	CNS0095600	Silvery flower (diploied) 3	21.426
	CNS0095601	Golden flower (diploid) 1	15.647
	CNS0095602	Golden flower (diploid) 2	25.791
	CNS0095603	Golden flower (diploid) 3	26.121
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.690
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.686
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.281
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.780
	CNS0095610	Silvery flower (tetraploid) 1	19.595
	CNS0095611	Silvery flower (tetraploid) 2	17.936
	CNS0095612	Silvery flower (tetraploid) 3	24.217
	CNS0095613	Golden flower (tetraploid) 1	13.081
	CNS0095614	Golden flower (tetraploid) 2	21.814
	CNS0095615	Golden flower (tetraploid) 3	23.397
CRA001975	CRR073297	Stem 1	21.707
	CRR073298	Stem 2	22.637
	CRR073299	Stem 3	18.867
	CRR073300	Leaf 1	33.103
	CRR073301	Leaf 2	30.692
	CRR073302	Leaf 3	27.805
	CRR073303	Juvenile bud 1	33.481
	CRR073304	Juvenile bud 2	25.650
	CRR073305	Juvenile bud 3	43.427
	CRR073306	Third green 1	19.552
	CRR073307	Third green 2	13.468
	CRR073308	Third green 3	19.250
	CRR073309	Second white 1	33.334
	CRR073310	Second white 2	35.238
	CRR073311	Second white 3	42.938
	CRR073312	Silver flowering 1	39.810
	CRR073313	Silver flowering 2	42.463
	CRR073314	Silver flowering 3	34.422
	CRR073315	Gold flowering 1	12.021
	CRR073316	Gold flowering 2	17.983
	CRR073317	Gold flowering 3	11.902
	CRR073318	Tawny withering 1	24.686
	CRR073319	Tawny withering 2	19.579
	CRR073320	Tawny withering 3	25.162