Gene detail

Detail information of GWHGAAZE008813

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275678.1	PREDICTED: L-ascorbate oxidase-like [Vitis vinifera]
Swissprot	tr\|Q40588\|ASO_TOBAC	L-ascorbate oxidase (Precursor)
trEMBL	tr\|F6HA36\|F6HA36_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49167.1}
TAIR10	AT5G21105.1	Plant L-ascorbate oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93277505	93287144	+
GWHAAZE00000002	mRNA	93277505	93287144	+
GWHAAZE00000002	exon	93277505	93277768	+
GWHAAZE00000002	exon	93278942	93279034	+
GWHAAZE00000002	exon	93279893	93280045	+
GWHAAZE00000002	exon	93281992	93282186	+
GWHAAZE00000002	exon	93286182	93287144	+
GWHAAZE00000002	CDS	93277505	93277768	+
GWHAAZE00000002	CDS	93278942	93279034	+
GWHAAZE00000002	CDS	93279893	93280045	+
GWHAAZE00000002	CDS	93281992	93282186	+
GWHAAZE00000002	CDS	93286182	93287144	+

Transcript Sequence
>GWHTAAZE008823 ATGGGTTTGTTGGTTGACCCTTTTCCAAGTGGGACTAGGGTTTTTGTGTTGTGGTGCTGTTTGTTTGGGCTAGTTTTTGGTTCAACCTTGGGGTCTAAGGTTAGACATTTCAAATGGGAAGTGGAGTACATGTACCATTCACCGGATTGTTTGGAGCATGTGGTTATGGGCATAAATGGCCAGTTCCCCGGTCCAACGATCCAGGCAGTCGCCGGAGACACCGTCGTCGTTGAACTTACAAATAAGCTTCACACCGAAGGAGTTCTTGGAACACCATGGGCTGATGGAACAGCTTCTATCTCACAGTGTGCTATAAACCCAGGAGAAACCTTTGTTTACAGGTTCAAAGTTGATAAGGCGGGAACATACTTTTACCATGGACATTATGGGATGCAAAGATCAGCAGGGCTATATGGGTCATTGATAGTGGAGGTGGAAGAGGGGAAGAAAGAACCATTCCATTATGATGGGGAATTTAACCTATTGTTGAGTGATTGGTGGCACAAAAATACCCTGCTGATAAATGGGAGAGGCCAGTACAACTGTTCCCTGGCAGCGCATGTTAGTGATTCTCCGTCAACTCCGTGCAAGTTTAGGGGGAACGAACAGTGCGCACCCCAGATCCTGCATGTGCTGCCAAACAAGACCTACCGACTCAGAGTGGCCAGCACCACTGCTTTGGCTTCTCTCAACTTGGCTATTGGGAACCACAAGATGACGGTGGTGGAAGCCGACGGCAACTACCTCCACCCCTTCACCGTGGACGACATTGACGTATACTCCGGCGAGAGCTACTCCGTCCTCTTTAATACTGACCAAAACCCTTCGAAAAACTACTGGATCTCCGTTAGCGTAAGAGGAAGACAACCAGGAACCCCTCAAGGCCTAACAATCCTCAACTACCGCACCGTGTCTGCCTCCAAACTCCCCCAATCACCACCACCGGTGGCCCCACTATGGAACAACTACACCCACAGCAAATCCTTCACGACAAAACTCCGGTCACTCGCAGGAACCCCGACCCCGCCACCCACCCACGACCGCCGTATCCTCCTCCTCAACACGCAAAACTTGATCAACGGATTCACCAAATGGGCCATCAACAACATCTCTTTGTCCTTGCCCGCTACGCCTTACCTCGGGGCAATAAAACACCGCCTCGGCAATGCATTCGACAAAACCCCCCCGCCGGCCACCTTTCCTAGCAAGTACGATGTCATGAATCCGGCTTCCAACTCGAACTCCACCTACGGAAGCGGGGTCTATATGTTCAACTATGGCGAAACTGTCGACGTGATCCTACAGAATGCAAATGCATTGGCAGCTAACACGAGTGAAATTCATCCGTGGCATTTGCATGGTCATGATTTTTGGGTTTTGGGGTACGGGGAAGGGAGGTTTAGGGATGGTCATGATGATGCGAAGTTTAACTTGAAGGATCCTCCCGCGAGGAACACTGCAGTCATATTCCCCTACGGTTGGACGGCATTGAGGTTTATCGCGGATAATCCCGGGGTTTGGGCTTTTCATTGCCATATCGAGCCGCATTTGCATATGGGAATGGGTGTGGTTTTTGCTGAAGCCGTTCATCGCGTGGGGAAGATCCCTGATGAGGCTCTTGCTTGTGGCCTAACTGCCAAAATGTTTAAGGGCAAAAAGAGAAATTGA

Network for GWHGAAZE008813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	41	146	3.80E-30
PF00394.23	Cu-oxidase	169	302	2.00E-39
PF07731.15	Cu-oxidase_2	411	528	3.80E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00423	E1.10.3.3	Metabolic pathways	map01100
K00423	E1.10.3.3	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005576	cellular_component	extracellular region
GO:0005507	molecular_function	copper ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.358
	SRR3591706	second leaf	24.753
	SRR3591707	mature leaf	52.682
	SRR3591708	Shoot apex	30.076
	SRR3591709	Stem	31.115
	SRR3591710	White floral bud	75.385
	SRR3591711	White flower	36.472
	SRR3591712	Green floral bud	260.370
	SRR3591713	Yellow flower	3.862
SRP173429	SRR8316895	Juvenile bud stage	42.784
	SRR8316896	Juvenile bud stage	51.361
	SRR8316897	Juvenile bud stage	30.628
	SRR8316894	Third green stage	28.357
	SRR8316900	Third green stage	107.952
	SRR8316901	Third green stage	97.663
	SRR8316898	Complete white stage	21.437
	SRR8316899	Complete white stage	124.913
	SRR8316903	Complete white stage	38.454
	SRR8316902	Silver flowering stage	7.877
	SRR8316904	Silver flowering stage	10.423
	SRR8316905	Silver flowering stage	4.816
	SRR8316906	Gold flowering stage	6.891
	SRR8316907	Gold flowering stage	10.123
	SRR8316908	Gold flowering stage	8.437
SRP132670	SRR6706286	Control	124.641
	SRR6706287	Light intensity 50%	135.411
	SRR6706288	Light intensity 20%	131.399
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.245
	CNS0095593	Slightly white alabastrum(diploid) 2	90.225
	CNS0095594	Slightly white alabastrum(diploid) 3	30.632
	CNS0095595	Whole white alabastrum(diploid) 2	60.972
	CNS0095596	Whole white alabastrum(diploid) 3	49.138
	CNS0095597	Whole white alabastrum(diploid) 4	54.518
	CNS0095598	Silvery flower (diploied) 1	23.678
	CNS0095599	Silvery flower (diploied) 2	20.481
	CNS0095600	Silvery flower (diploied) 3	28.543
	CNS0095601	Golden flower (diploid) 1	6.120
	CNS0095602	Golden flower (diploid) 2	12.418
	CNS0095603	Golden flower (diploid) 3	10.020
	CNS0095604	Slightly white alabastrum(tetraploid) 1	67.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.724
	CNS0095606	Slightly white alabastrum(tetraploid) 3	149.817
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.401
	CNS0095609	Whole white alabastrum(tetraploid) 3	109.817
	CNS0095610	Silvery flower (tetraploid) 1	17.669
	CNS0095611	Silvery flower (tetraploid) 2	9.736
	CNS0095612	Silvery flower (tetraploid) 3	6.695
	CNS0095613	Golden flower (tetraploid) 1	1.794
	CNS0095614	Golden flower (tetraploid) 2	4.129
	CNS0095615	Golden flower (tetraploid) 3	0.667
CRA001975	CRR073297	Stem 1	108.492
	CRR073298	Stem 2	117.095
	CRR073299	Stem 3	120.057
	CRR073300	Leaf 1	224.911
	CRR073301	Leaf 2	217.383
	CRR073302	Leaf 3	170.455
	CRR073303	Juvenile bud 1	274.592
	CRR073304	Juvenile bud 2	182.433
	CRR073305	Juvenile bud 3	389.131
	CRR073306	Third green 1	59.073
	CRR073307	Third green 2	48.818
	CRR073308	Third green 3	52.666
	CRR073309	Second white 1	16.793
	CRR073310	Second white 2	13.430
	CRR073311	Second white 3	10.861
	CRR073312	Silver flowering 1	5.815
	CRR073313	Silver flowering 2	4.790
	CRR073314	Silver flowering 3	2.980
	CRR073315	Gold flowering 1	10.244
	CRR073316	Gold flowering 2	13.826
	CRR073317	Gold flowering 3	9.560
	CRR073318	Tawny withering 1	33.971
	CRR073319	Tawny withering 2	39.606
	CRR073320	Tawny withering 3	39.873