Gene detail

Detail information of GWHGAAZE008830

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO72903.1	4.9572E-159	hypothetical protein CISIN_1g018785mg [Citrus sinensis]
Swissprot	tr\|O49840\|APK2B_ARATH	1E-128	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|A0A067FZW3\|A0A067FZW3_CITSI	2E-159	Uncharacterized protein {ECO:0000313\|EMBL:KDO72903.1}
TAIR10	AT2G02800.2	2E-105	protein kinase 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	93990238	93995027	-
GWHAAZE00000002	mRNA	93990238	93995027	-
GWHAAZE00000002	exon	93990238	93990650	-
GWHAAZE00000002	exon	93991262	93991385	-
GWHAAZE00000002	exon	93991505	93991641	-
GWHAAZE00000002	exon	93992093	93992228	-
GWHAAZE00000002	exon	93992340	93992678	-
GWHAAZE00000002	exon	93994988	93995027	-
GWHAAZE00000002	five_prime_UTR	93994988	93995027	-
GWHAAZE00000002	five_prime_UTR	93992580	93992678	-
GWHAAZE00000002	CDS	93992340	93992579	-
GWHAAZE00000002	CDS	93992093	93992228	-
GWHAAZE00000002	CDS	93991505	93991641	-
GWHAAZE00000002	CDS	93991262	93991385	-
GWHAAZE00000002	CDS	93990238	93990650	-

Transcript Sequence
>GWHTAAZE008840 TCTGCCAAGTGTGCTCATGCTTCTTCTAACCAATTCTATGAAGCTAAAGTATCCCCAAGAAACCGCACACAGGATTCAACCTCTAACTACCAGCAAACATCTTCAAGCAGTTTGAACAAAGCTCTTGTAGAATCCAATTATGATAAATCCAATTATGATAAATCTGCTAATAACAACCTCAAGTCCTTTGTCTTCAATGATCTCAAGAACGCCTGCAAGAACTTCCGCTCAGATAGTCTTCTTGGTGAGGGCGGTTTTGGGTGGGTCTTTAAAGGATGGATTGATGAGCACACTTTTGCTCCTAGCAAACCTGGCACCGGATCGTAGTGGCCATAAAAAACTCAAGCAAGAAAGCTTTCAAGGTCACAGGGAATGGCTTACAGAAGTTAACTACTTAGGGCAGCTTCACCATGAAAATCTTGTGAAACTCATCGGTTATTGTTCAGAATCTGAGCACAGACTTCTAGTTTATGAGTTCATGCCGAAGGGGAGTTTGGAAAATCATCTTTTCAGAAAAGGTGTTCAACCTATAGCTTGGGCTACAAGGATGCGTATTGCAATAGATGTTGCTCGGGGCTTATCCTTCTTACACAATTTAGATGCCAACGTCATCTATCGTGATTTGAAGGCTTCCAATATTCTACTCGATTCGGAGTTCAATGCAAAGTTATCAGATTTTGGTCTAGCAAGGGATGGTCCTACTGGAGATAACACGCACGTTTCAACCAGAGTTGTGGGTACTAGGGGTTATGCAGCTCCAGAATATGTTGCCACAGGCCACTTGACTCCAAAGAGCGATGTGTACAGTTTTGGAGTCATCTTGCTAGAGTTGCTATCAGGCCGACGAGCCCTAGCTGACGAGAGAGACGGGGGCGTGGAAGAAACATTGGTGGACTGGGCCAAGCCATTCCTAGGTGACAACAGGCGAGTCTTGAGAATAATGGACTCGAGATTAGGCGGTCAATACTACAAGAAAGGCGCCCAAACCATATCCTCCATAGCCTTGAAGTGCCTGCACATGGATCCCAAACACCGGCCGGCCATGATTGATGTTTTGGCTGCTTTGGAAGAAGAACAACTTCATAACTCGAAAGATGCGCCGAGGATGGTATCGCCGCAAGGGCAGAGCAGGACCGAGAAGGTGAGTTACCCTCGGAGGACGGCAACGGGAACCATGAACTCGAGTTAG

Network for GWHGAAZE008830

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	66	306	4.70E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.563
	SRR3591706	second leaf	0.145
	SRR3591707	mature leaf	1.200
	SRR3591708	Shoot apex	0.969
	SRR3591709	Stem	3.948
	SRR3591710	White floral bud	2.287
	SRR3591711	White flower	2.784
	SRR3591712	Green floral bud	0.876
	SRR3591713	Yellow flower	5.155
SRP173429	SRR8316895	Juvenile bud stage	0.958
	SRR8316896	Juvenile bud stage	1.250
	SRR8316897	Juvenile bud stage	0.964
	SRR8316894	Third green stage	0.204
	SRR8316900	Third green stage	0.283
	SRR8316901	Third green stage	0.462
	SRR8316898	Complete white stage	0.573
	SRR8316899	Complete white stage	1.284
	SRR8316903	Complete white stage	0.210
	SRR8316902	Silver flowering stage	1.896
	SRR8316904	Silver flowering stage	0.954
	SRR8316905	Silver flowering stage	0.952
	SRR8316906	Gold flowering stage	6.113
	SRR8316907	Gold flowering stage	3.563
	SRR8316908	Gold flowering stage	9.311
SRP132670	SRR6706286	Control	1.038
	SRR6706287	Light intensity 50%	0.776
	SRR6706288	Light intensity 20%	0.438
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.020
	CNS0095593	Slightly white alabastrum(diploid) 2	0.686
	CNS0095594	Slightly white alabastrum(diploid) 3	1.358
	CNS0095595	Whole white alabastrum(diploid) 2	0.389
	CNS0095596	Whole white alabastrum(diploid) 3	0.187
	CNS0095597	Whole white alabastrum(diploid) 4	0.563
	CNS0095598	Silvery flower (diploied) 1	1.063
	CNS0095599	Silvery flower (diploied) 2	1.248
	CNS0095600	Silvery flower (diploied) 3	1.542
	CNS0095601	Golden flower (diploid) 1	2.388
	CNS0095602	Golden flower (diploid) 2	1.955
	CNS0095603	Golden flower (diploid) 3	2.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.561
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.253
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.502
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.540
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.282
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.510
	CNS0095610	Silvery flower (tetraploid) 1	0.853
	CNS0095611	Silvery flower (tetraploid) 2	0.342
	CNS0095612	Silvery flower (tetraploid) 3	0.625
	CNS0095613	Golden flower (tetraploid) 1	1.688
	CNS0095614	Golden flower (tetraploid) 2	2.638
	CNS0095615	Golden flower (tetraploid) 3	0.270
CRA001975	CRR073297	Stem 1	0.952
	CRR073298	Stem 2	0.592
	CRR073299	Stem 3	0.261
	CRR073300	Leaf 1	0.702
	CRR073301	Leaf 2	1.034
	CRR073302	Leaf 3	0.435
	CRR073303	Juvenile bud 1	0.324
	CRR073304	Juvenile bud 2	0.607
	CRR073305	Juvenile bud 3	0.166
	CRR073306	Third green 1	0.060
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.022
	CRR073309	Second white 1	0.755
	CRR073310	Second white 2	0.452
	CRR073311	Second white 3	0.384
	CRR073312	Silver flowering 1	2.133
	CRR073313	Silver flowering 2	2.153
	CRR073314	Silver flowering 3	2.307
	CRR073315	Gold flowering 1	1.418
	CRR073316	Gold flowering 2	1.530
	CRR073317	Gold flowering 3	1.703
	CRR073318	Tawny withering 1	4.590
	CRR073319	Tawny withering 2	13.398
	CRR073320	Tawny withering 3	3.861