Gene detail

Detail information of GWHGAAZE008841

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17261.1	2.7326E-106	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-68	F-box protein CPR30
trEMBL	tr\|A0A068V9F9\|A0A068V9F9_COFCA	1E-106	Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313\|EMBL:CDP17261.1}
TAIR10	AT4G12560.2	2E-58	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94315894	94316841	-
GWHAAZE00000002	mRNA	94315894	94316841	-
GWHAAZE00000002	exon	94315894	94316841	-
GWHAAZE00000002	CDS	94315894	94316841	-

Transcript Sequence
>GWHTAAZE008851 ATGTCTGACATTCCTGAGGATGTTGTTGCCGACATACTATCGCGATTACCGGTGAAGTATCTTCTCCGATTCAGGTGCGTCTCAAAACCATGGCGCGCCCTAATTGGCAGTGTTGATTTCATTAACTTGCATCTCAATCGTGCAAAAAATAACACTACAATCATTAGAAAGGGTTGTGAATGCCTCTATTCTATTAACTTGGATTCACTTGACAATGCTGTAACACTCAACTACCGCCAACTAAACCCTAATGAACAGAGCATCCTAGCAACTAAAATAGTAGGTTCTTGCAATGGGCTGCTCTGTTTGAACAACTCGGAGAAATACATTTTCTTGTGGAACCCAGCAACGAGAAAGTACCGGAAATCACCTGTTAGTAGGGTTCGGTTGGGGTTTCAATTTGTTGCTTTTGGATTTGGTTATGATGATGTTAGTGATGACTACAAAGTTGTGAGGATGGTACAATTTTATGGGGAGGATGCTAAACATTCATTTAGGTCTGAGGTTAGCATATACTCCATGAAACCTGATTCGTGGAGAAGGATTGGGGATTTCCCTTATTACTTTACGTATGAGAGGGTCTCTGGTGTGCTTGCTAGTGGTGCTTTGCATTGGGTTGTTACTCGAAATCGTAGTAGTAGTGAGAATTTAATTGTTGCATTTGATCTTAGAACTGAGGAATATAGGTTGGTGCCACTGCCTCAATATTTGGATAAGAAGTTTCATATGAATGTGGATGTATTAGGAGGATGTCTGTGTGTGCTTTGTCACGTTGACTTGCTTTATGTTGAAATGTGGGTGATGGAGGATTATGGAGTCGAGAAATCATGGACCAAGTTAATTTCGGCTGCACAGGCCGAAATTATAAATTCCTTCAATGCTTTATTGCCTGTTGCATATTCCAAGAGCCGTGAGCAAGTGATTCTGTTAAAATTCCAAGAGCCGTGA

Network for GWHGAAZE008841

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	39	2.10E-09
PF07734.14	FBA_1	197	292	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.283
	SRR3591706	second leaf	0.757
	SRR3591707	mature leaf	0.497
	SRR3591708	Shoot apex	1.885
	SRR3591709	Stem	0.988
	SRR3591710	White floral bud	0.966
	SRR3591711	White flower	1.731
	SRR3591712	Green floral bud	1.143
	SRR3591713	Yellow flower	0.809
SRP173429	SRR8316895	Juvenile bud stage	1.060
	SRR8316896	Juvenile bud stage	1.301
	SRR8316897	Juvenile bud stage	0.164
	SRR8316894	Third green stage	0.420
	SRR8316900	Third green stage	2.158
	SRR8316901	Third green stage	1.503
	SRR8316898	Complete white stage	0.272
	SRR8316899	Complete white stage	2.388
	SRR8316903	Complete white stage	0.911
	SRR8316902	Silver flowering stage	0.658
	SRR8316904	Silver flowering stage	0.592
	SRR8316905	Silver flowering stage	0.446
	SRR8316906	Gold flowering stage	0.736
	SRR8316907	Gold flowering stage	0.501
	SRR8316908	Gold flowering stage	0.224
SRP132670	SRR6706286	Control	0.868
	SRR6706287	Light intensity 50%	1.087
	SRR6706288	Light intensity 20%	1.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.020
	CNS0095593	Slightly white alabastrum(diploid) 2	0.739
	CNS0095594	Slightly white alabastrum(diploid) 3	0.603
	CNS0095595	Whole white alabastrum(diploid) 2	0.805
	CNS0095596	Whole white alabastrum(diploid) 3	0.945
	CNS0095597	Whole white alabastrum(diploid) 4	0.505
	CNS0095598	Silvery flower (diploied) 1	0.621
	CNS0095599	Silvery flower (diploied) 2	1.844
	CNS0095600	Silvery flower (diploied) 3	1.411
	CNS0095601	Golden flower (diploid) 1	1.111
	CNS0095602	Golden flower (diploid) 2	1.025
	CNS0095603	Golden flower (diploid) 3	1.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.500
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.084
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.663
	CNS0095610	Silvery flower (tetraploid) 1	0.379
	CNS0095611	Silvery flower (tetraploid) 2	0.167
	CNS0095612	Silvery flower (tetraploid) 3	0.168
	CNS0095613	Golden flower (tetraploid) 1	0.318
	CNS0095614	Golden flower (tetraploid) 2	0.298
	CNS0095615	Golden flower (tetraploid) 3	0.204
CRA001975	CRR073297	Stem 1	1.686
	CRR073298	Stem 2	1.060
	CRR073299	Stem 3	0.658
	CRR073300	Leaf 1	0.959
	CRR073301	Leaf 2	0.848
	CRR073302	Leaf 3	0.154
	CRR073303	Juvenile bud 1	1.038
	CRR073304	Juvenile bud 2	0.316
	CRR073305	Juvenile bud 3	0.313
	CRR073306	Third green 1	0.217
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.154
	CRR073309	Second white 1	0.061
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.278
	CRR073312	Silver flowering 1	0.289
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.048
	CRR073316	Gold flowering 2	0.790
	CRR073317	Gold flowering 3	0.076
	CRR073318	Tawny withering 1	1.649
	CRR073319	Tawny withering 2	0.146
	CRR073320	Tawny withering 3	0.401