Gene detail

Detail information of GWHGAAZE008847

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015806.1	3.28757E-93	Calcium-binding EF-hand family protein [Theobroma cacao]
Swissprot	tr\|Q9ZQH1\|CML48_ARATH	2E-62	Probable calcium-binding protein CML48
trEMBL	tr\|A0A061GU85\|A0A061GU85_THECC	1E-93	Calcium-binding EF-hand family protein {ECO:0000313\|EMBL:EOY33425.1}
TAIR10	AT2G27480.1	2E-47	Calcium-binding EF-hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94497446	94501066	-
GWHAAZE00000002	mRNA	94497446	94501066	-
GWHAAZE00000002	exon	94497446	94497491	-
GWHAAZE00000002	exon	94497607	94497782	-
GWHAAZE00000002	exon	94498554	94498600	-
GWHAAZE00000002	exon	94500748	94501066	-
GWHAAZE00000002	CDS	94500748	94501066	-
GWHAAZE00000002	CDS	94498554	94498600	-
GWHAAZE00000002	CDS	94497607	94497782	-
GWHAAZE00000002	CDS	94497446	94497491	-

Transcript Sequence
>GWHTAAZE008857 ATGTCTTACTCCCATTCCAACCCAACCTACTCCGCCCCCTCGGCTCCCCCCTTATCCGAATCTCCGTCCGGGTGGGGCCACCCTTATCAAGCGCCTCCCAATTACTACGGTCAGGGTCAGGGAGGTTACGGGTCATTTCCGCCCGGGACCCACCCGGACGTCATTCGGAGTTTTCAAATGGTGGATAGGGATCGGAGCGGGTTCATAGACGAGAACGAGCTTCAACAGGGTCTGTCTTCGGGTTACCAGAGGTTTAGTATTCGTACTGTCAGGCTCCTCATGTTTCTCTTCAAAAACCCTCACGATTCTCTCCGAATTGGCCCCAAAGAGTTTGCGGAAGTCTGGAGTTGTCTTGGTCAATGGAGGGCCATGTTTGAGAGATTCGATAGGGATCGAAGTGGGAAAATCGATGCAATGGAACTAAAGGATGCACTCTATAGTCTTGGATACGCAATTCCACCTTCAGTTCTTCAAGTTTTGATTTCCCGATATGATAATGGAAGCGGCCGAAAGATCGAACTAACATTTGACAGCTTTGTCGAGTGTGGGATGATTGTGAAGGTGAGCTGCATTTCTTTACAATCTTGA

Network for GWHGAAZE008847

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	56	76	4.20E-05
PF00036.33	EF-hand_1	121	147	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13448	CML	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.114
	SRR3591706	second leaf	4.153
	SRR3591707	mature leaf	2.348
	SRR3591708	Shoot apex	9.320
	SRR3591709	Stem	6.235
	SRR3591710	White floral bud	10.914
	SRR3591711	White flower	11.256
	SRR3591712	Green floral bud	3.406
	SRR3591713	Yellow flower	12.742
SRP173429	SRR8316895	Juvenile bud stage	18.625
	SRR8316896	Juvenile bud stage	11.425
	SRR8316897	Juvenile bud stage	27.540
	SRR8316894	Third green stage	2.366
	SRR8316900	Third green stage	5.247
	SRR8316901	Third green stage	6.905
	SRR8316898	Complete white stage	4.287
	SRR8316899	Complete white stage	21.765
	SRR8316903	Complete white stage	6.542
	SRR8316902	Silver flowering stage	6.083
	SRR8316904	Silver flowering stage	3.299
	SRR8316905	Silver flowering stage	1.954
	SRR8316906	Gold flowering stage	9.476
	SRR8316907	Gold flowering stage	8.579
	SRR8316908	Gold flowering stage	11.776
SRP132670	SRR6706286	Control	6.136
	SRR6706287	Light intensity 50%	4.422
	SRR6706288	Light intensity 20%	5.998
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.309
	CNS0095593	Slightly white alabastrum(diploid) 2	17.772
	CNS0095594	Slightly white alabastrum(diploid) 3	28.268
	CNS0095595	Whole white alabastrum(diploid) 2	16.149
	CNS0095596	Whole white alabastrum(diploid) 3	5.862
	CNS0095597	Whole white alabastrum(diploid) 4	12.064
	CNS0095598	Silvery flower (diploied) 1	20.989
	CNS0095599	Silvery flower (diploied) 2	27.437
	CNS0095600	Silvery flower (diploied) 3	13.033
	CNS0095601	Golden flower (diploid) 1	25.597
	CNS0095602	Golden flower (diploid) 2	21.027
	CNS0095603	Golden flower (diploid) 3	22.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.115
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.064
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.518
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.947
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.211
	CNS0095610	Silvery flower (tetraploid) 1	7.041
	CNS0095611	Silvery flower (tetraploid) 2	7.325
	CNS0095612	Silvery flower (tetraploid) 3	23.922
	CNS0095613	Golden flower (tetraploid) 1	9.011
	CNS0095614	Golden flower (tetraploid) 2	6.494
	CNS0095615	Golden flower (tetraploid) 3	10.600
CRA001975	CRR073297	Stem 1	13.537
	CRR073298	Stem 2	10.268
	CRR073299	Stem 3	15.997
	CRR073300	Leaf 1	8.902
	CRR073301	Leaf 2	12.567
	CRR073302	Leaf 3	14.295
	CRR073303	Juvenile bud 1	13.299
	CRR073304	Juvenile bud 2	13.576
	CRR073305	Juvenile bud 3	11.769
	CRR073306	Third green 1	7.259
	CRR073307	Third green 2	7.992
	CRR073308	Third green 3	8.925
	CRR073309	Second white 1	11.514
	CRR073310	Second white 2	15.829
	CRR073311	Second white 3	11.289
	CRR073312	Silver flowering 1	18.738
	CRR073313	Silver flowering 2	21.499
	CRR073314	Silver flowering 3	13.958
	CRR073315	Gold flowering 1	12.773
	CRR073316	Gold flowering 2	33.290
	CRR073317	Gold flowering 3	35.533
	CRR073318	Tawny withering 1	25.680
	CRR073319	Tawny withering 2	130.388
	CRR073320	Tawny withering 3	26.613