Detail information of GWHGAAZE008850


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006362952.11.32431E-33PREDICTED: putative F-box protein At3g23970-like [Solanum tuberosum]
Swissprottr|Q1PE57|FBK87_ARATH3E-14Putative F-box/kelch-repeat protein At4g22430
trEMBLtr|M1CC90|M1CC90_SOLTU5E-34Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400064371}
TAIR10AT4G22430.13E-11F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9460729894610088-
GWHAAZE00000002mRNA9460729894610088-
GWHAAZE00000002exon9460729894608038-
GWHAAZE00000002exon9460951694610088-
GWHAAZE00000002CDS9460951694610088-
GWHAAZE00000002CDS9460729894608038-
Transcript Sequence

Network for GWHGAAZE008850

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box31711.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.477
SRR8316896Juvenile bud stage 0.679
SRR8316897Juvenile bud stage 0.163
SRR8316894Third green stage 0.455
SRR8316900Third green stage 0.796
SRR8316901Third green stage 0.648
SRR8316898Complete white stage 0.841
SRR8316899Complete white stage 2.682
SRR8316903Complete white stage 1.838
SRR8316902Silver flowering stage0.272
SRR8316904Silver flowering stage0.477
SRR8316905Silver flowering stage0.511
SRR8316906Gold flowering stage 1.211
SRR8316907Gold flowering stage 0.696
SRR8316908Gold flowering stage 1.212
SRP132670SRR6706286Control1.039
SRR6706287Light intensity 50%1.214
SRR6706288Light intensity 20%1.505
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.021
CNS0095593Slightly white alabastrum(diploid) 21.594
CNS0095594Slightly white alabastrum(diploid) 30.450
CNS0095595Whole white alabastrum(diploid) 20.825
CNS0095596Whole white alabastrum(diploid) 30.701
CNS0095597Whole white alabastrum(diploid) 40.804
CNS0095598Silvery flower (diploied) 11.253
CNS0095599Silvery flower (diploied) 20.773
CNS0095600Silvery flower (diploied) 32.213
CNS0095601Golden flower (diploid) 11.343
CNS0095602Golden flower (diploid) 22.146
CNS0095603Golden flower (diploid) 31.424
CNS0095604Slightly white alabastrum(tetraploid) 11.357
CNS0095605Slightly white alabastrum(tetraploid) 20.798
CNS0095606Slightly white alabastrum(tetraploid) 31.487
CNS0095607Whole white alabastrum(tetraploid) 10.540
CNS0095608Whole white alabastrum(tetraploid) 20.548
CNS0095609Whole white alabastrum(tetraploid) 30.715
CNS0095610Silvery flower (tetraploid) 11.441
CNS0095611Silvery flower (tetraploid) 21.911
CNS0095612Silvery flower (tetraploid) 32.916
CNS0095613Golden flower (tetraploid) 10.859
CNS0095614Golden flower (tetraploid) 20.868
CNS0095615Golden flower (tetraploid) 30.824
CRA001975CRR073297Stem 11.467
CRR073298Stem 20.605
CRR073299Stem 31.105
CRR073300Leaf 10.800
CRR073301Leaf 20.988
CRR073302Leaf 30.903
CRR073303Juvenile bud 10.824
CRR073304Juvenile bud 20.937
CRR073305Juvenile bud 31.173
CRR073306Third green 11.251
CRR073307Third green 20.551
CRR073308Third green 32.317
CRR073309Second white 11.648
CRR073310Second white 21.541
CRR073311Second white 30.407
CRR073312Silver flowering 11.116
CRR073313Silver flowering 20.319
CRR073314Silver flowering 30.335
CRR073315Gold flowering 11.280
CRR073316Gold flowering 21.760
CRR073317Gold flowering 32.159
CRR073318Tawny withering 11.917
CRR073319Tawny withering 21.324
CRR073320Tawny withering 31.633