Gene detail

Detail information of GWHGAAZE008855

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015404.1	1.9037E-174	20S proteasome alpha subunit G1 [Theobroma cacao]
Swissprot	tr\|O23715\|PSA3_ARATH	3E-170	Proteasome subunit alpha type-3
trEMBL	tr\|A0A061GUC3\|A0A061GUC3_THECC	7E-175	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT2G27020.1	4E-126	20S proteasome alpha subunit G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94757503	94767304	+
GWHAAZE00000002	mRNA	94757503	94767304	+
GWHAAZE00000002	exon	94757503	94757606	+
GWHAAZE00000002	exon	94757712	94757751	+
GWHAAZE00000002	exon	94757839	94757922	+
GWHAAZE00000002	exon	94760176	94760249	+
GWHAAZE00000002	exon	94762913	94762999	+
GWHAAZE00000002	exon	94763109	94763193	+
GWHAAZE00000002	exon	94763329	94763375	+
GWHAAZE00000002	exon	94764408	94764473	+
GWHAAZE00000002	exon	94766091	94766181	+
GWHAAZE00000002	exon	94767233	94767304	+
GWHAAZE00000002	CDS	94757503	94757606	+
GWHAAZE00000002	CDS	94757712	94757751	+
GWHAAZE00000002	CDS	94757839	94757922	+
GWHAAZE00000002	CDS	94760176	94760249	+
GWHAAZE00000002	CDS	94762913	94762999	+
GWHAAZE00000002	CDS	94763109	94763193	+
GWHAAZE00000002	CDS	94763329	94763375	+
GWHAAZE00000002	CDS	94764408	94764473	+
GWHAAZE00000002	CDS	94766091	94766181	+
GWHAAZE00000002	CDS	94767233	94767304	+

Transcript Sequence
>GWHTAAZE008865 ATGGCGAGCATAGGAACAGGCTACGATCTATCAGTTACTACTTTCTCTCCCGATGGCCGTGTATTTCAAATTGAATACGCCGCTAAAGCCGTCGACAACAGTGGGACTGTTGTTGGTATTAGATGCAAGGATGGAATTGTTATGGGCGTGGAGAAGCTCATAACATCTAAGATGATGCTGCCTGGATCTAATCGCAGGATCCACTCCGTACATCGTCACTCTGGCATGGCTGTTGCTGGACTAGCAGCAGATGGGAGACAAATTGTTGCGCGCGCAAAGGCCGAAGCTACAAATTACGAAAGTACTTATGGTGAACCCATTCCTGTAAAGGAACTTACTGAACGTGTTGCAAGTTATGTGCATCTATGCACACTATATTGGTGGCTCAGACCTTTTGGTTGTGGAGTTATTCTTGGAGGTTATGACAGAGAAGGGCCGCAACTATACATGATCGAACCTTCTGGTATTTCATATAGATACTTAGGCGCTGCAATTGGAAAAGGAAAGCAGGCTGCTAAAACGGAAATTGAAAAGCTGAAGCTTTCTGAAATGACCTGCAGGGAAGGGGTTATTGAAGTAGCGAAGATCATCTATAGGGTACATGATGAGGCAAAGGACAAGGCCTTCGAATTGGAGATGAGCTGGGTTTGTGATGAGTCAAAGCGTCAGCATGTAAAGGTACCAGAGGATCTTTTGTCGGAGGCAAAGGCTGCTGCTAGGACTGCACTAGAGGAAATGGATGCTGACTAA

Network for GWHGAAZE008855

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0060

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	8	30	1.30E-13
PF00227.27	Proteasome	32	216	3.80E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02727	PSMA3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	156.592
	SRR3591706	second leaf	82.849
	SRR3591707	mature leaf	61.549
	SRR3591708	Shoot apex	145.531
	SRR3591709	Stem	149.221
	SRR3591710	White floral bud	131.370
	SRR3591711	White flower	211.580
	SRR3591712	Green floral bud	161.313
	SRR3591713	Yellow flower	128.873
SRP173429	SRR8316895	Juvenile bud stage	100.826
	SRR8316896	Juvenile bud stage	133.925
	SRR8316897	Juvenile bud stage	67.342
	SRR8316894	Third green stage	52.098
	SRR8316900	Third green stage	172.754
	SRR8316901	Third green stage	146.603
	SRR8316898	Complete white stage	68.965
	SRR8316899	Complete white stage	178.439
	SRR8316903	Complete white stage	86.464
	SRR8316902	Silver flowering stage	69.880
	SRR8316904	Silver flowering stage	78.380
	SRR8316905	Silver flowering stage	45.132
	SRR8316906	Gold flowering stage	217.607
	SRR8316907	Gold flowering stage	229.202
	SRR8316908	Gold flowering stage	211.591
SRP132670	SRR6706286	Control	156.172
	SRR6706287	Light intensity 50%	167.322
	SRR6706288	Light intensity 20%	186.264
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	147.548
	CNS0095593	Slightly white alabastrum(diploid) 2	185.280
	CNS0095594	Slightly white alabastrum(diploid) 3	146.933
	CNS0095595	Whole white alabastrum(diploid) 2	136.386
	CNS0095596	Whole white alabastrum(diploid) 3	127.487
	CNS0095597	Whole white alabastrum(diploid) 4	116.265
	CNS0095598	Silvery flower (diploied) 1	99.740
	CNS0095599	Silvery flower (diploied) 2	103.859
	CNS0095600	Silvery flower (diploied) 3	141.242
	CNS0095601	Golden flower (diploid) 1	112.677
	CNS0095602	Golden flower (diploid) 2	125.087
	CNS0095603	Golden flower (diploid) 3	114.364
	CNS0095604	Slightly white alabastrum(tetraploid) 1	135.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	124.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	166.913
	CNS0095607	Whole white alabastrum(tetraploid) 1	82.700
	CNS0095608	Whole white alabastrum(tetraploid) 2	83.660
	CNS0095609	Whole white alabastrum(tetraploid) 3	155.532
	CNS0095610	Silvery flower (tetraploid) 1	162.642
	CNS0095611	Silvery flower (tetraploid) 2	151.674
	CNS0095612	Silvery flower (tetraploid) 3	133.702
	CNS0095613	Golden flower (tetraploid) 1	135.650
	CNS0095614	Golden flower (tetraploid) 2	150.058
	CNS0095615	Golden flower (tetraploid) 3	173.394
CRA001975	CRR073297	Stem 1	154.873
	CRR073298	Stem 2	143.929
	CRR073299	Stem 3	194.438
	CRR073300	Leaf 1	162.010
	CRR073301	Leaf 2	168.744
	CRR073302	Leaf 3	191.859
	CRR073303	Juvenile bud 1	217.411
	CRR073304	Juvenile bud 2	219.613
	CRR073305	Juvenile bud 3	210.286
	CRR073306	Third green 1	101.079
	CRR073307	Third green 2	98.526
	CRR073308	Third green 3	98.068
	CRR073309	Second white 1	226.721
	CRR073310	Second white 2	192.432
	CRR073311	Second white 3	150.024
	CRR073312	Silver flowering 1	118.205
	CRR073313	Silver flowering 2	129.794
	CRR073314	Silver flowering 3	92.498
	CRR073315	Gold flowering 1	89.390
	CRR073316	Gold flowering 2	102.379
	CRR073317	Gold flowering 3	88.851
	CRR073318	Tawny withering 1	173.374
	CRR073319	Tawny withering 2	176.521
	CRR073320	Tawny withering 3	178.759