Gene detail

Detail information of GWHGAAZE008857

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN74740.1	8.10741E-81	hypothetical protein VITISV_040899 [Vitis vinifera]
Swissprot	tr\|Q94B46\|FBL74_ARATH	3E-57	F-box/LRR-repeat protein At4g14096
trEMBL	tr\|A5BLF6\|A5BLF6_VITVI	3E-81	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN74740.1}
TAIR10	AT4G14096.1	2E-45	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94818627	94820716	-
GWHAAZE00000002	mRNA	94818627	94820716	-
GWHAAZE00000002	exon	94818627	94819160	-
GWHAAZE00000002	exon	94819552	94819698	-
GWHAAZE00000002	exon	94819781	94820716	-
GWHAAZE00000002	CDS	94819781	94820716	-
GWHAAZE00000002	CDS	94819552	94819698	-
GWHAAZE00000002	CDS	94818867	94819160	-
GWHAAZE00000002	three_prime_UTR	94818627	94818866	-

Transcript Sequence
>GWHTAAZE008867 ATGGCTTCACTTGCAAGCAGTCAGGGACCTTTGAAAATGGCGAAAACCTGGAATGGAGAGGATAGAATCAGCAGCTTACCCGACTCGGTTATTGTTCACATTCTCTCTTTCCTTCCAACAAAATGGGGAATTGCGACCAGCATTCTATCAACAAGATGGAAGCACCTATGGGCTTCGGTTCCAATTCTGTCTTTCAAAAGCTTTATTGAGGATGATCCCGAGTTGACTAGTAGATTCATGAATTTTGTGGATCGAGCACTTTTCTTGCATGATTTATCATGCATTCAAAGCTTCCATTTAAAGTGTGGTAAAGGGATTGATACATCCCGTTTGAACGCATGGATAACTCTTTTAATTAGGCGTCGTATCCAAGAGCTTGATATCTCCATTTCTACATATAAGCGTCTCAAATTGCCCCTTGACCTCTTTACTTGCAAATCACTAGTAGTACTCAAACTTCAACCTTATCTTCGACTGGATGTTCCATCCTCTATTTTTTTCCCTAGTCTTAAGACCCTCCATATTTCGCTTGGTCTTCCAAACAATGACTTAACAGAAAGACTTTTCTCTAGCTGCCCTGTGCTCGAAAATTTGTCGATAGACGGACGTATAAACAATTTCAATCCTATGTTATTTAATATATCCTCACCTGTTTTGAAGAGTTTAGAGATTGATCTGTTTACTTATGTATTTGAATTTTTTGTGAGTAAAATTGTAGTTAATGCACCAGCTCTTCAATACCTTACTATTCGAGATAATGTCTTGTGTCGCTATGTGTTGAGTAACCTATCCTCGTTAGTTGAAGTAAATGTTAGTGTTGGAGATTGCTGTATGGAAGAACAGGGAGGCACCATACAACATGCTAATCGAGCACGCTTGCTTGTCAAAGAAATCTCTAGTGTTAAGGCTCTCTCTCTCGGAACTAATACAATGGCGGTTCTTAGTTATGCTGATGATTTTGATTGGCCAACATTTCCTAATTTGATCCGGTTGGAGTTGAGTATTTTTGAACTGTCTGGTTGGAAAAGAATGCCGAACTTGCTCGCAAGAGTGCCTAATCTAGCTGTGCTTATACTAAGGATGGAGAAAGGTGAATTTGCCTGTGAGGATGCTATGCTCTTTGAGGGTTTCAGTTGGATTCAACCAGAAGGAAGACCTGCTTGCTCGTTCTCATGCCTAAAAGAAATTAGGATTTGTGGATTCTCGGGATCAAAAGATGAGGTGGAGCTGATAAAGTATCTTCTACAAAATGCAAAAGTTTTTGAGAAGATGATAATTAAGTGTCGTTATTTACATTTAGAGGAAGAGAATGAGTTTCTCAAGAAGCTATTAACGTTTCCAAGGGGTTCAAGTGCTTGTCAAATTCAGTTTGCTTGAAAGTTTCTTCAGTCATGGTAAGATCCCTTCCTTCACTTGTATTAGATTTTGCATTAGATATTTGCTGGTTTTGTTTGAAATTGTTGCTCTGAATACATCATTTTGGAGATGTTATTGTCTAAAATGATATGTCTATTAAGCGAGAAAGAGTTCATTTTGTGTACATAAAATGTCTAAAACACGTTCATGCATGGCGGGGGTTTGAACTACAACCTCTTGGAAGAAAAATAAACATCTTGA

Network for GWHGAAZE008857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08387.11	FBD	381	426	7.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.564
	SRR3591706	second leaf	1.736
	SRR3591707	mature leaf	2.865
	SRR3591708	Shoot apex	3.289
	SRR3591709	Stem	5.585
	SRR3591710	White floral bud	2.761
	SRR3591711	White flower	3.154
	SRR3591712	Green floral bud	2.980
	SRR3591713	Yellow flower	2.502
SRP173429	SRR8316895	Juvenile bud stage	2.331
	SRR8316896	Juvenile bud stage	3.706
	SRR8316897	Juvenile bud stage	2.074
	SRR8316894	Third green stage	0.973
	SRR8316900	Third green stage	3.383
	SRR8316901	Third green stage	2.671
	SRR8316898	Complete white stage	0.992
	SRR8316899	Complete white stage	3.171
	SRR8316903	Complete white stage	1.169
	SRR8316902	Silver flowering stage	1.145
	SRR8316904	Silver flowering stage	1.186
	SRR8316905	Silver flowering stage	0.395
	SRR8316906	Gold flowering stage	1.238
	SRR8316907	Gold flowering stage	0.742
	SRR8316908	Gold flowering stage	1.054
SRP132670	SRR6706286	Control	0.290
	SRR6706287	Light intensity 50%	0.277
	SRR6706288	Light intensity 20%	0.511
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.209
	CNS0095593	Slightly white alabastrum(diploid) 2	1.309
	CNS0095594	Slightly white alabastrum(diploid) 3	2.574
	CNS0095595	Whole white alabastrum(diploid) 2	2.491
	CNS0095596	Whole white alabastrum(diploid) 3	2.318
	CNS0095597	Whole white alabastrum(diploid) 4	1.784
	CNS0095598	Silvery flower (diploied) 1	2.375
	CNS0095599	Silvery flower (diploied) 2	1.282
	CNS0095600	Silvery flower (diploied) 3	3.336
	CNS0095601	Golden flower (diploid) 1	1.943
	CNS0095602	Golden flower (diploid) 2	2.867
	CNS0095603	Golden flower (diploid) 3	2.651
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.726
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.220
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.558
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.228
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.637
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.642
	CNS0095610	Silvery flower (tetraploid) 1	3.617
	CNS0095611	Silvery flower (tetraploid) 2	3.668
	CNS0095612	Silvery flower (tetraploid) 3	2.908
	CNS0095613	Golden flower (tetraploid) 1	1.639
	CNS0095614	Golden flower (tetraploid) 2	2.185
	CNS0095615	Golden flower (tetraploid) 3	2.679
CRA001975	CRR073297	Stem 1	1.928
	CRR073298	Stem 2	1.563
	CRR073299	Stem 3	0.960
	CRR073300	Leaf 1	2.432
	CRR073301	Leaf 2	1.183
	CRR073302	Leaf 3	0.758
	CRR073303	Juvenile bud 1	0.881
	CRR073304	Juvenile bud 2	0.679
	CRR073305	Juvenile bud 3	0.720
	CRR073306	Third green 1	0.100
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.195
	CRR073309	Second white 1	0.353
	CRR073310	Second white 2	0.059
	CRR073311	Second white 3	0.503
	CRR073312	Silver flowering 1	1.042
	CRR073313	Silver flowering 2	0.691
	CRR073314	Silver flowering 3	0.353
	CRR073315	Gold flowering 1	0.572
	CRR073316	Gold flowering 2	0.642
	CRR073317	Gold flowering 3	0.135
	CRR073318	Tawny withering 1	0.756
	CRR073319	Tawny withering 2	0.738
	CRR073320	Tawny withering 3	0.799