Gene detail

Detail information of GWHGAAZE008860

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42972.1	0	hypothetical protein JCGZ_23914 [Jatropha curcas]
Swissprot	tr\|Q8VWF6\|SSL3_ARATH	0	Protein STRICTOSIDINE SYNTHASE-LIKE 3 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|A0A067L3G4\|A0A067L3G4_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42972.1}
TAIR10	AT1G08470.1	1E-170	strictosidine synthase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94855987	94861164	-
GWHAAZE00000002	mRNA	94855987	94861164	-
GWHAAZE00000002	exon	94860725	94861164	-
GWHAAZE00000002	exon	94858492	94858767	-
GWHAAZE00000002	exon	94857099	94857266	-
GWHAAZE00000002	exon	94855987	94856389	-
GWHAAZE00000002	five_prime_UTR	94861054	94861164	-
GWHAAZE00000002	CDS	94860725	94861053	-
GWHAAZE00000002	CDS	94858492	94858767	-
GWHAAZE00000002	CDS	94857099	94857266	-
GWHAAZE00000002	CDS	94855987	94856389	-

Transcript Sequence
>GWHTAAZE008870 TTCCTCTAGATTTTTCTCATTTGTAATAAAAATTCAGTGGGTTTTCTTTCTTTATCTTTCCCTTTTGGGTTTCAAAGAAATCACACCAATTTTGTCACCGGAACCCCGACAATGTCGCTGGCAGGAGTTTTAGCGATTTTATTCCTATTATTGGCTCTGTACTGCGGAACCGACCCTTTTAAGCACAGTGCTATTTCTGAATTCCCTGATTTCGAGTCGGTGTATGTCGAAATGCCGGCGTGGGCCGAGGTTCCGGGGGAGAAAGACAAGGAGAACTTGCTGCAGAAGTCGGAGATTAGGTTTTTGAATCAAGTGCAAGGGCCGGAGAGTGTGGCTTTTGATCCCCAAGGAAGGGGGCCGTATACTGGTGTTGCTGATGGCAGGGTTTTGTTTTGGAATGGAGAGAATTGGACTGATTTTGCTTATACTTCGCCGAATCGTTCAGGCCTATGTGACCTGAAGCCATCGCCTTTGAGCTACTTAAAGAATGAGCACATATGCGGGAGACCTTTGGGGCTTCGGTTTGACAAGAAAACAGGGGATTTATATATTGCAGATGCATATCTTGGGTTACTGAAGGTTGGGCCTGAAGGTGGATTGGCAACTTCTCTAACAACTGAGGCTGAAGGGGTTCCTCTGTGGTTCACAAACGACCTTGATGTGGATGATGAGGGTAACGTTTATTTTACAGATAGCAGCTCCAAATACCGAAGGAGGAACTTCATGCAACTCGTTTTCTCTTCAGAACCTAGTGGTAGAGTTTTGAAATATGACCCAAAAACAAAAGAAACCACTGTTCTCATTCGAAATCTTCAATTTCCTAACGGCTTGTCTCTAAGCAATGATTATTCGTTCTTTGTCTTGTGCGAGGGGTCCATTGGAAGATTACGAAAATACTGGTTGAAAGGTGAAAAGGCCGGTACGTCCGAAGTAATGGCCATCCTACCAGGTTACCCTGACAACGTGAGGAGAAACGAGAAAGGAGAATACTGGGTCGCGATCCACTGTCGCCGCACCCTCTACACTTACTTTTGCGCGCACCACCCAAAGATCCGAAAATTCTTGCTGAAGCTGCCGATCCCTGCTAAGATACAATACCTGTTCCACATCGGAGGGCGGCTACACGCGGCAGTGGTCAAGTACAGCGCGGAAGGAAAGCTTTTGAAGATATTGGAGGACAGGGAAGGGAAAGTTGTTAGAGCAGTGAGTGAAGTGGAGGAGAAAGATGGCAAGCTTTGGATGGGGAGTGTCTTGATGCCTTTTGTTGCTGTTTACAACTTAGATTAA

Network for GWHGAAZE008860

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0128

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03088.17	Str_synth	180	267	1.90E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016844	molecular_function	strictosidine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.444
	SRR3591706	second leaf	40.263
	SRR3591707	mature leaf	18.588
	SRR3591708	Shoot apex	65.444
	SRR3591709	Stem	36.204
	SRR3591710	White floral bud	15.050
	SRR3591711	White flower	22.687
	SRR3591712	Green floral bud	11.540
	SRR3591713	Yellow flower	15.404
SRP173429	SRR8316895	Juvenile bud stage	28.885
	SRR8316896	Juvenile bud stage	33.428
	SRR8316897	Juvenile bud stage	15.463
	SRR8316894	Third green stage	11.412
	SRR8316900	Third green stage	26.028
	SRR8316901	Third green stage	19.378
	SRR8316898	Complete white stage	3.801
	SRR8316899	Complete white stage	23.691
	SRR8316903	Complete white stage	6.729
	SRR8316902	Silver flowering stage	3.068
	SRR8316904	Silver flowering stage	5.083
	SRR8316905	Silver flowering stage	2.636
	SRR8316906	Gold flowering stage	7.759
	SRR8316907	Gold flowering stage	8.017
	SRR8316908	Gold flowering stage	12.859
SRP132670	SRR6706286	Control	22.630
	SRR6706287	Light intensity 50%	22.978
	SRR6706288	Light intensity 20%	25.437
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.510
	CNS0095593	Slightly white alabastrum(diploid) 2	31.325
	CNS0095594	Slightly white alabastrum(diploid) 3	32.512
	CNS0095595	Whole white alabastrum(diploid) 2	25.238
	CNS0095596	Whole white alabastrum(diploid) 3	17.561
	CNS0095597	Whole white alabastrum(diploid) 4	20.372
	CNS0095598	Silvery flower (diploied) 1	51.754
	CNS0095599	Silvery flower (diploied) 2	39.578
	CNS0095600	Silvery flower (diploied) 3	23.313
	CNS0095601	Golden flower (diploid) 1	39.835
	CNS0095602	Golden flower (diploid) 2	33.043
	CNS0095603	Golden flower (diploid) 3	29.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.803
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.439
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.790
	CNS0095610	Silvery flower (tetraploid) 1	20.108
	CNS0095611	Silvery flower (tetraploid) 2	23.385
	CNS0095612	Silvery flower (tetraploid) 3	16.429
	CNS0095613	Golden flower (tetraploid) 1	13.513
	CNS0095614	Golden flower (tetraploid) 2	21.388
	CNS0095615	Golden flower (tetraploid) 3	6.701
CRA001975	CRR073297	Stem 1	34.078
	CRR073298	Stem 2	28.561
	CRR073299	Stem 3	36.471
	CRR073300	Leaf 1	23.488
	CRR073301	Leaf 2	26.570
	CRR073302	Leaf 3	24.906
	CRR073303	Juvenile bud 1	14.949
	CRR073304	Juvenile bud 2	10.390
	CRR073305	Juvenile bud 3	18.653
	CRR073306	Third green 1	4.724
	CRR073307	Third green 2	3.884
	CRR073308	Third green 3	4.420
	CRR073309	Second white 1	21.890
	CRR073310	Second white 2	8.658
	CRR073311	Second white 3	7.076
	CRR073312	Silver flowering 1	14.351
	CRR073313	Silver flowering 2	23.451
	CRR073314	Silver flowering 3	14.031
	CRR073315	Gold flowering 1	26.050
	CRR073316	Gold flowering 2	25.828
	CRR073317	Gold flowering 3	23.954
	CRR073318	Tawny withering 1	38.618
	CRR073319	Tawny withering 2	37.544
	CRR073320	Tawny withering 3	33.888