Gene detail

Detail information of GWHGAAZE008861

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007015604.1	Ubiquitin carboxyl-terminal hydrolase 8 isoform 2 [Theobroma cacao]
Swissprot	tr\|Q9C585\|UBP8_ARATH	Ubiquitin carboxyl-terminal hydrolase 8
trEMBL	tr\|A0A061GV07\|A0A061GV07_THECC	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G22030.2	ubiquitin-specific protease 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	94905583	94928619	+
GWHAAZE00000002	mRNA	94905583	94928619	+
GWHAAZE00000002	exon	94905583	94905683	+
GWHAAZE00000002	exon	94906369	94906635	+
GWHAAZE00000002	exon	94907052	94907190	+
GWHAAZE00000002	exon	94913386	94913445	+
GWHAAZE00000002	exon	94913526	94913615	+
GWHAAZE00000002	exon	94917213	94917500	+
GWHAAZE00000002	exon	94917984	94918178	+
GWHAAZE00000002	exon	94918257	94918427	+
GWHAAZE00000002	exon	94919959	94920216	+
GWHAAZE00000002	exon	94920336	94920484	+
GWHAAZE00000002	exon	94922603	94923118	+
GWHAAZE00000002	exon	94925003	94925276	+
GWHAAZE00000002	exon	94928479	94928619	+
GWHAAZE00000002	CDS	94905583	94905683	+
GWHAAZE00000002	CDS	94906369	94906635	+
GWHAAZE00000002	CDS	94907052	94907190	+
GWHAAZE00000002	CDS	94913386	94913445	+
GWHAAZE00000002	CDS	94913526	94913615	+
GWHAAZE00000002	CDS	94917213	94917500	+
GWHAAZE00000002	CDS	94917984	94918178	+
GWHAAZE00000002	CDS	94918257	94918427	+
GWHAAZE00000002	CDS	94919959	94920216	+
GWHAAZE00000002	CDS	94920336	94920484	+
GWHAAZE00000002	CDS	94922603	94923118	+
GWHAAZE00000002	CDS	94925003	94925276	+
GWHAAZE00000002	CDS	94928479	94928619	+

Transcript Sequence
>GWHTAAZE008871 ATGGAAAGTAGTAGTCCCTCCGAAGATTCCTCCGATACTTCTCAACAAATCCTCTCTAACGGCGACAACGACGACCAACGAGTCTACTTCGTCCCCTACAGGTGGTTGAAGGAAGCACAAGATTCATCATCTACAGTGGTTGATTCATCTTCAGATGGGAAGAAGAGAGGGATTTTATATACTGCTTCACCGGCTTCGTCTTATGCGGGGCCGATGAAGATAATCAACAACATATTTAATTCAGACCTCGTGTTTAATCTCAGAAGAGAGGATGAGTCTTTGCAGAATAGCGAGAATGGTGAAGTGGGGATCTCAGGTCGAGATTATGCTTTGGTCCCTGGGGAAATGTGGCTTCAGGCATTTAAATGGCACAGTGATTCTAAAGTTGCATTGAAGGAGAAGAGTTTTTCAGCTTCAGAAAATGATATGGCTGATGTCTATCCGTTACAACTTAAGCTTTCTGTTTCGCGGGAGACCAACTCACTTGGAATAAAAATAAGCAAAAAGGACAATGCAGTTGATTATTTTAGAAGAGCGTGCAAAATTTTCAGTGTTGAACCAGAACAATTACGTATTTGGGATTTTTCTGGGCAAACAACCGTATATCTTGATAAAATTAAAATTGTAAAAGATTCTCAACGGCAGCCAGAACAGGATATTCTTCTAGAATTGCAAGTTTATGGATTGTCAGATTCTGTTAGAAATAGAGAAATGAAAAAAGATGAGATGGCAGTACAACATTCTAACGGAGTTTCACAGACGATGAATGGTAGGAATGGTTTTTCCGAAGCTGGTCCTTTGGGCCTAACCGGATTACAAAACCTTGGAAATACTTGTTTCATGAATAGTGCCCTTCAGTGCCTGGCACACACCCCAATGCTTGTTGACTACTTTCTTGGAGATTACAAGAGAGAAATAAATCATGACAACCCATTAGGCATGAATGGTGAGATTGCTTCAGCATTTGGAGATTTAATGAAGAAGCTGTGGGCTCCTGGAGCAACTCCAGTAGCACCAAGAATGTTCAAGTCGAAGCTGGCTCACTTTGCTCCTCAATTCAGTGGTTTTAATCAGCATGATTCTCAAGTTTGTAAATCTCTCTTGCTCTCAGCTGAAAATTTCTGTAACTTTCTCATTCTGGAGCTCCTGGCCTTTTTATTGGATGGACTCCATGAAGATGTGAATCGGGTGAAAAACAAACCCTATTTTGAAGCTAAGGATGGAGATGGTCGTCCAGATGAAGAAGTAGCTGATGAATATTGGAAGAATCATCGGGCTCGCAACGACTCTATTATTGTTGATGTGTGCCAAGGTCAATATAGGTCCACATTAGTGTGCCCTGATTGCAAAAAGTCCTCAGTTACTTTTGATCCATTCATGTATGTGTCATTACCTCTACCATCAACGTCAATGCGGACAATGACTTTGACAGTAGTGAGCACTAATGGAAGTACCCAACCATCTCCATTCACCATTAATGTTCCCAAGCGTGGCAAGTTTGAAGATCTTATTCAGGCTTTAAGCACTGCCTGTTCCTTGGGAGTTGATGAAGCTCTCTTGGTGGCTGAGGTATACAACAACTGCATTATACGTTTTATTTCGGAGCCAACTGATTCTTTATCATTAATTAGAGATGATGATCAACTGGTTGCTTATCGGTTACCAAAGGACTTTGAGGACGCACCTTTGGTTTTGTTCATGCATCAACAGTTGGTTGAGAACTATATCTGTGGGAAGCATTCATCAAATTGGAAGGCATTTGGCATACCTCTTGTAGCAAGTTGTAAAATCGAAAACGGATCTGATATCCGTGATCTATATTTGAAATTGCTTACTCCATTCTCAGAGTCCGTCTTAAATTCATCCGACAATTGCGAAAGCAGTGAGAACATTTCACCTGAAGGAATTGCTGACAATTCTGATGGAAAAGAGACTGACAAGCATACCGATACTGATTTGCACTTTTACTTAACGGACGAGAAAGCATCTGCTAGGGTTTCGGAGATATCAATGAACGAGCCAGTAAGTTCCTCTACGGGTTTGGATGGTCGGTTGAATGTTATTGTGACCTTGCCAGAAAAAATAATTCATCGGTACAATACACGGCTTTTGAGCTCGCTGCCTGAAGTTTTCAAGTCCGGGTTTTTTGCAAAACGGCCTCAAGAGACTGTTTCTCTGTATAATTGCCTTGAAGCATTTCTTAAGCAGGAGCCTCTTGGACCCGATGACATGTGGTACTGTCCTGTCTGCAAGAAGCATTGTCAAGCCAGTAAAAAGTTAGATCTTTGGAGATTGCCAGATATTCTTGTAATCCATCTAAAGAGGTTCTCTTACAACCGGTTTCTGAAGAACAAATTGGAGACATTTGTCGACTTTCCTACCCACAATCTTGATTTGTCGACATATATTGCATATAAGAATGGACAATCATCATATCGATATATGCTTTATGCGATTAGTAATCACTATGGAAGCATGGGTGGTGGTCATTATACTGCGTTTGTCCATCATGGTGGTGACCGTTGGTACGACTTTGACGACAGCCACGTGTCACCTATCAGCGAAGACAAGATAAAAACTTCGGCTGCTTATGTTCTGTTCTACAGAAGAGTCAAAGAAGACAACGTCCAAAAAAAATCAACAGATTGA

Network for GWHGAAZE008861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.30	UCH	270	370	3.30E-27
PF00443.30	UCH	381	868	7.70E-50

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K21343	USP15	Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0016579	biological_process	protein deubiquitination
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.356
	SRR3591706	second leaf	5.441
	SRR3591707	mature leaf	2.678
	SRR3591708	Shoot apex	7.153
	SRR3591709	Stem	6.404
	SRR3591710	White floral bud	8.757
	SRR3591711	White flower	4.322
	SRR3591712	Green floral bud	13.134
	SRR3591713	Yellow flower	2.623
SRP173429	SRR8316895	Juvenile bud stage	6.855
	SRR8316896	Juvenile bud stage	9.606
	SRR8316897	Juvenile bud stage	4.966
	SRR8316894	Third green stage	4.303
	SRR8316900	Third green stage	12.925
	SRR8316901	Third green stage	12.574
	SRR8316898	Complete white stage	1.936
	SRR8316899	Complete white stage	6.167
	SRR8316903	Complete white stage	3.093
	SRR8316902	Silver flowering stage	1.268
	SRR8316904	Silver flowering stage	2.532
	SRR8316905	Silver flowering stage	0.877
	SRR8316906	Gold flowering stage	2.509
	SRR8316907	Gold flowering stage	2.821
	SRR8316908	Gold flowering stage	2.302
SRP132670	SRR6706286	Control	6.046
	SRR6706287	Light intensity 50%	6.374
	SRR6706288	Light intensity 20%	6.984
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.326
	CNS0095593	Slightly white alabastrum(diploid) 2	6.955
	CNS0095594	Slightly white alabastrum(diploid) 3	7.981
	CNS0095595	Whole white alabastrum(diploid) 2	10.216
	CNS0095596	Whole white alabastrum(diploid) 3	13.040
	CNS0095597	Whole white alabastrum(diploid) 4	12.435
	CNS0095598	Silvery flower (diploied) 1	2.890
	CNS0095599	Silvery flower (diploied) 2	2.986
	CNS0095600	Silvery flower (diploied) 3	3.686
	CNS0095601	Golden flower (diploid) 1	2.945
	CNS0095602	Golden flower (diploid) 2	4.698
	CNS0095603	Golden flower (diploid) 3	3.664
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.136
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.728
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.251
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.840
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.864
	CNS0095610	Silvery flower (tetraploid) 1	3.498
	CNS0095611	Silvery flower (tetraploid) 2	3.714
	CNS0095612	Silvery flower (tetraploid) 3	4.025
	CNS0095613	Golden flower (tetraploid) 1	1.372
	CNS0095614	Golden flower (tetraploid) 2	2.061
	CNS0095615	Golden flower (tetraploid) 3	2.122
CRA001975	CRR073297	Stem 1	8.209
	CRR073298	Stem 2	6.693
	CRR073299	Stem 3	5.127
	CRR073300	Leaf 1	8.795
	CRR073301	Leaf 2	6.919
	CRR073302	Leaf 3	5.170
	CRR073303	Juvenile bud 1	7.082
	CRR073304	Juvenile bud 2	4.719
	CRR073305	Juvenile bud 3	3.810
	CRR073306	Third green 1	1.662
	CRR073307	Third green 2	1.453
	CRR073308	Third green 3	1.991
	CRR073309	Second white 1	0.410
	CRR073310	Second white 2	1.400
	CRR073311	Second white 3	1.787
	CRR073312	Silver flowering 1	2.117
	CRR073313	Silver flowering 2	1.481
	CRR073314	Silver flowering 3	0.939
	CRR073315	Gold flowering 1	1.553
	CRR073316	Gold flowering 2	3.243
	CRR073317	Gold flowering 3	1.284
	CRR073318	Tawny withering 1	4.520
	CRR073319	Tawny withering 2	3.797
	CRR073320	Tawny withering 3	3.758