Detail information of GWHGAAZE008879


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004156028.11.08651E-59PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus]
trEMBLtr|A0A061GZM1|A0A061GZM1_THECC1E-58P-loop containing nucleoside triphosphate hydrolases superfamily protein {ECO:0000313|EMBL:EOY33274.1}
TAIR10AT2G27200.12E-41P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9537364795375485+
GWHAAZE00000002mRNA9537364795375485+
GWHAAZE00000002exon9537364795373870+
GWHAAZE00000002exon9537502695375105+
GWHAAZE00000002exon9537531695375485+
GWHAAZE00000002CDS9537364795373870+
GWHAAZE00000002CDS9537502695375105+
GWHAAZE00000002CDS9537531695375485+
Transcript Sequence

Network for GWHGAAZE008879

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14539LSG1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.189
SRR3591706second leaf13.942
SRR3591707mature leaf15.710
SRR3591708Shoot apex15.254
SRR3591709Stem13.065
SRR3591710White floral bud24.437
SRR3591711White flower36.741
SRR3591712Green floral bud16.539
SRR3591713Yellow flower26.877
SRP173429 SRR8316895Juvenile bud stage 10.970
SRR8316896Juvenile bud stage 14.312
SRR8316897Juvenile bud stage 6.787
SRR8316894Third green stage 8.902
SRR8316900Third green stage 18.306
SRR8316901Third green stage 21.612
SRR8316898Complete white stage 11.488
SRR8316899Complete white stage 30.463
SRR8316903Complete white stage 22.782
SRR8316902Silver flowering stage15.527
SRR8316904Silver flowering stage22.616
SRR8316905Silver flowering stage12.303
SRR8316906Gold flowering stage 36.282
SRR8316907Gold flowering stage 37.466
SRR8316908Gold flowering stage 34.548
SRP132670SRR6706286Control27.560
SRR6706287Light intensity 50%25.410
SRR6706288Light intensity 20%28.997
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.002
CNS0095593Slightly white alabastrum(diploid) 28.661
CNS0095594Slightly white alabastrum(diploid) 36.331
CNS0095595Whole white alabastrum(diploid) 24.245
CNS0095596Whole white alabastrum(diploid) 32.709
CNS0095597Whole white alabastrum(diploid) 46.068
CNS0095598Silvery flower (diploied) 110.551
CNS0095599Silvery flower (diploied) 27.901
CNS0095600Silvery flower (diploied) 333.720
CNS0095601Golden flower (diploid) 19.567
CNS0095602Golden flower (diploid) 229.258
CNS0095603Golden flower (diploid) 332.734
CNS0095604Slightly white alabastrum(tetraploid) 17.891
CNS0095605Slightly white alabastrum(tetraploid) 26.685
CNS0095606Slightly white alabastrum(tetraploid) 330.015
CNS0095607Whole white alabastrum(tetraploid) 15.382
CNS0095608Whole white alabastrum(tetraploid) 24.069
CNS0095609Whole white alabastrum(tetraploid) 316.966
CNS0095610Silvery flower (tetraploid) 139.143
CNS0095611Silvery flower (tetraploid) 234.851
CNS0095612Silvery flower (tetraploid) 327.662
CNS0095613Golden flower (tetraploid) 113.897
CNS0095614Golden flower (tetraploid) 228.632
CNS0095615Golden flower (tetraploid) 341.382
CRA001975CRR073297Stem 121.783
CRR073298Stem 218.795
CRR073299Stem 322.434
CRR073300Leaf 125.557
CRR073301Leaf 220.373
CRR073302Leaf 317.914
CRR073303Juvenile bud 122.713
CRR073304Juvenile bud 223.494
CRR073305Juvenile bud 330.938
CRR073306Third green 125.581
CRR073307Third green 222.060
CRR073308Third green 320.201
CRR073309Second white 119.980
CRR073310Second white 217.913
CRR073311Second white 326.061
CRR073312Silver flowering 130.699
CRR073313Silver flowering 240.251
CRR073314Silver flowering 332.863
CRR073315Gold flowering 19.835
CRR073316Gold flowering 216.619
CRR073317Gold flowering 313.672
CRR073318Tawny withering 118.177
CRR073319Tawny withering 210.755
CRR073320Tawny withering 315.168