Gene detail

Detail information of GWHGAAZE008881

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002264570.1	7.8018E-161	PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	2E-21	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|F6HAE9\|F6HAE9_VITVI	6E-161	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49211.1}
TAIR10	AT1G08410.1	4E-117	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	95382577	95385223	+
GWHAAZE00000002	mRNA	95382577	95385223	+
GWHAAZE00000002	exon	95382577	95382627	+
GWHAAZE00000002	exon	95383710	95383783	+
GWHAAZE00000002	exon	95384121	95384636	+
GWHAAZE00000002	exon	95384737	95385223	+
GWHAAZE00000002	CDS	95382577	95382627	+
GWHAAZE00000002	CDS	95383710	95383783	+
GWHAAZE00000002	CDS	95384121	95384636	+
GWHAAZE00000002	CDS	95384737	95385223	+

Transcript Sequence
>GWHTAAZE008891 ATGGTTGTTGATGCACGAGACCCACTATTCTACCGTTGCCCTGATCTTGAGGCATATGCAAGAGAGGTTGATGAACACAAAGGACACTGCTTCTCATCAACAAGGCAGATCTTTTACCATTTGATAAAAAAATGGGCTGAATACTTCCGCGGTCAAGGAATTCTCTTTTTATTTTGGTCTGCTAAGGCTGCCACTGCAATTTTGGAAGGAAAAACCAGTACTTTCCCATCAGAGACAGAAGACCTGGTTGACGGTGAAACGAAAATATACGGACGAGAAGAGCTGTTGGCCCGCTTACAATCTGAGGCAGAGGAAATTGCTTCAATGAGGAGGAAATTGGGGGCTGATACTACAAATACATCGAGAAGTGTAACAGTTGGATTCGTAGGGTACCCTAACGTTGGAAAAAGCTCGACAATCAATGCATTGGTAGGTGAAAAGCGGACGGGGGTAACTTCAACTCCGGGGAAGACAAAGCATTTTCAAACATTAATAATATCCAGTAAACTTACATTGTGCGATTGCCCGGGATTGGTGTTTCCATCCTTTACAAGCTCGAGATACGAGATGGTTGCCTCTGGGGTCCTACCAATTGATCGAATGACAGAGCACCGGAGCCTGTACAGGTTGTGGCTGATCGGGGCATATTGTGCATCTCGTGGGTATGTTGCCTCGAGTGGACTGCCTGACGAAACAAAAGCTGCCCGGATAATTTTGAAGGATTACATTGATGGGAAGTTGCCACACTTTGAAATGCCTCCGGGTTTGGAACCAGATCAGGAGGCCTTTGCTGGGCCTGGCCCATCGGAGGTCCATGGGTCTAGTTCAGATTCGGGATTGTCTGATGATGAAGACTCTGTGGGCCCCGAAGGCGAAGGTGGGCCCAGTCTAGAGCATGTGCTCAGGGATTTGAATTCATTTGATATGGATAATGGGCTAGTTTTTTCAGGCAAGGCAGCCATGAAGAAAAAAAAATCGGAAAGTGGGTCCCACAAACAACACAAGAAGCCCCAGAGGAAGAAAGACCGGTCATGGCGGGTCAGAGATAACGAAGGTGATGGAATGGCAGTATCTAGGGTTCACCAGAAGCCAGTAAATACAGGACCTTTGAAGGTGGGCGGCAGTTGA

Network for GWHGAAZE008881

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.24	MMR_HSR1	126	181	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14539	LSG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.137
	SRR3591706	second leaf	18.565
	SRR3591707	mature leaf	22.729
	SRR3591708	Shoot apex	30.914
	SRR3591709	Stem	25.722
	SRR3591710	White floral bud	32.963
	SRR3591711	White flower	53.838
	SRR3591712	Green floral bud	31.978
	SRR3591713	Yellow flower	43.465
SRP173429	SRR8316895	Juvenile bud stage	14.437
	SRR8316896	Juvenile bud stage	21.514
	SRR8316897	Juvenile bud stage	7.858
	SRR8316894	Third green stage	9.067
	SRR8316900	Third green stage	29.491
	SRR8316901	Third green stage	28.263
	SRR8316898	Complete white stage	13.902
	SRR8316899	Complete white stage	44.680
	SRR8316903	Complete white stage	25.966
	SRR8316902	Silver flowering stage	22.812
	SRR8316904	Silver flowering stage	25.497
	SRR8316905	Silver flowering stage	11.825
	SRR8316906	Gold flowering stage	38.114
	SRR8316907	Gold flowering stage	40.009
	SRR8316908	Gold flowering stage	43.552
SRP132670	SRR6706286	Control	26.880
	SRR6706287	Light intensity 50%	29.048
	SRR6706288	Light intensity 20%	30.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.290
	CNS0095593	Slightly white alabastrum(diploid) 2	18.843
	CNS0095594	Slightly white alabastrum(diploid) 3	16.555
	CNS0095595	Whole white alabastrum(diploid) 2	16.691
	CNS0095596	Whole white alabastrum(diploid) 3	15.082
	CNS0095597	Whole white alabastrum(diploid) 4	15.175
	CNS0095598	Silvery flower (diploied) 1	24.572
	CNS0095599	Silvery flower (diploied) 2	15.957
	CNS0095600	Silvery flower (diploied) 3	46.246
	CNS0095601	Golden flower (diploid) 1	16.967
	CNS0095602	Golden flower (diploid) 2	38.524
	CNS0095603	Golden flower (diploid) 3	33.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.597
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.293
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.055
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.160
	CNS0095610	Silvery flower (tetraploid) 1	43.933
	CNS0095611	Silvery flower (tetraploid) 2	39.119
	CNS0095612	Silvery flower (tetraploid) 3	42.246
	CNS0095613	Golden flower (tetraploid) 1	28.520
	CNS0095614	Golden flower (tetraploid) 2	36.262
	CNS0095615	Golden flower (tetraploid) 3	46.969
CRA001975	CRR073297	Stem 1	36.329
	CRR073298	Stem 2	30.788
	CRR073299	Stem 3	31.020
	CRR073300	Leaf 1	35.434
	CRR073301	Leaf 2	33.667
	CRR073302	Leaf 3	30.579
	CRR073303	Juvenile bud 1	38.741
	CRR073304	Juvenile bud 2	31.151
	CRR073305	Juvenile bud 3	45.097
	CRR073306	Third green 1	30.712
	CRR073307	Third green 2	27.970
	CRR073308	Third green 3	26.706
	CRR073309	Second white 1	36.443
	CRR073310	Second white 2	34.931
	CRR073311	Second white 3	33.086
	CRR073312	Silver flowering 1	44.358
	CRR073313	Silver flowering 2	44.955
	CRR073314	Silver flowering 3	42.824
	CRR073315	Gold flowering 1	19.020
	CRR073316	Gold flowering 2	28.669
	CRR073317	Gold flowering 3	18.700
	CRR073318	Tawny withering 1	33.318
	CRR073319	Tawny withering 2	27.653
	CRR073320	Tawny withering 3	37.975