Detail information of GWHGAAZE008895


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009779356.12.9413E-139PREDICTED: transcription factor TGA2 [Nicotiana sylvestris]
Swissprottr|O24160|TGA21_TOBAC4E-98TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBLtr|A0A068UFE7|A0A068UFE7_COFCA4E-133Coffea canephora DH200=94 genomic scaffold, scaffold_24 {ECO:0000313|EMBL:CDP06929.1}
TAIR10AT1G08320.39E-92bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9624735896249785-
GWHAAZE00000002mRNA9624735896249785-
GWHAAZE00000002exon9624735896247588-
GWHAAZE00000002exon9624821396248484-
GWHAAZE00000002exon9624889696248938-
GWHAAZE00000002exon9624925996249336-
GWHAAZE00000002exon9624944896249564-
GWHAAZE00000002exon9624973596249785-
GWHAAZE00000002CDS9624973596249785-
GWHAAZE00000002CDS9624944896249564-
GWHAAZE00000002CDS9624925996249336-
GWHAAZE00000002CDS9624889696248938-
GWHAAZE00000002CDS9624821396248484-
GWHAAZE00000002CDS9624735896247588-
Transcript Sequence

Network for GWHGAAZE008895

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00170.22bZIP_131631.90E-07
PF14144.7DOG11101845.30E-29
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybZIP

KEGG pathway

KO Enzyme pathway mapID
K14431TGA Plant hormone signal transduction map04075

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0043565molecular_functionsequence-specific DNA binding
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.091
SRR3591706second leaf0.143
SRR3591707mature leaf0.086
SRR3591708Shoot apex0.550
SRR3591709Stem2.525
SRR3591710White floral bud2.217
SRR3591711White flower2.386
SRR3591712Green floral bud0.693
SRR3591713Yellow flower4.398
SRP173429 SRR8316895Juvenile bud stage 0.008
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.210
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.544
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.362
SRR8316902Silver flowering stage0.811
SRR8316904Silver flowering stage0.327
SRR8316905Silver flowering stage0.127
SRR8316906Gold flowering stage 0.974
SRR8316907Gold flowering stage 1.650
SRR8316908Gold flowering stage 1.886
SRP132670SRR6706286Control0.081
SRR6706287Light intensity 50%0.077
SRR6706288Light intensity 20%0.119
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.304
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.289
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.284
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.153
CNS0095599Silvery flower (diploied) 20.136
CNS0095600Silvery flower (diploied) 31.248
CNS0095601Golden flower (diploid) 10.432
CNS0095602Golden flower (diploid) 20.724
CNS0095603Golden flower (diploid) 30.590
CNS0095604Slightly white alabastrum(tetraploid) 10.028
CNS0095605Slightly white alabastrum(tetraploid) 20.467
CNS0095606Slightly white alabastrum(tetraploid) 30.313
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.005
CNS0095609Whole white alabastrum(tetraploid) 30.325
CNS0095610Silvery flower (tetraploid) 10.424
CNS0095611Silvery flower (tetraploid) 21.575
CNS0095612Silvery flower (tetraploid) 34.969
CNS0095613Golden flower (tetraploid) 11.780
CNS0095614Golden flower (tetraploid) 20.916
CNS0095615Golden flower (tetraploid) 31.970
CRA001975CRR073297Stem 10.256
CRR073298Stem 20.046
CRR073299Stem 30.341
CRR073300Leaf 10.056
CRR073301Leaf 20.000
CRR073302Leaf 30.058
CRR073303Juvenile bud 10.062
CRR073304Juvenile bud 20.158
CRR073305Juvenile bud 30.291
CRR073306Third green 11.196
CRR073307Third green 21.280
CRR073308Third green 32.069
CRR073309Second white 10.999
CRR073310Second white 21.039
CRR073311Second white 31.959
CRR073312Silver flowering 12.040
CRR073313Silver flowering 22.365
CRR073314Silver flowering 31.616
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 11.734
CRR073319Tawny withering 21.575
CRR073320Tawny withering 31.504