Detail information of GWHGAAZE008897


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN74125.11.76657E-59hypothetical protein VITISV_038770 [Vitis vinifera]
Swissprottr|P27788|FER3_MAIZE3E-60Ferredoxin-3, chloroplastic (Precursor)
trEMBLtr|F6HHG1|F6HHG1_VITVI4E-60Putative uncharacterized protein {ECO:0000313|EMBL:CCB51657.1}
TAIR10AT2G27510.11E-39ferredoxin 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9635238296352678+
GWHAAZE00000002mRNA9635238296352678+
GWHAAZE00000002exon9635238296352678+
GWHAAZE00000002CDS9635238296352678+
Transcript Sequence

Network for GWHGAAZE008897

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00111.28Fer211841.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02639petF Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0022900biological_processelectron transport chain
GO:0009055molecular_functionelectron transfer activity
GO:0051536molecular_functioniron-sulfur cluster binding
GO:0051537molecular_function2 iron, 2 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.847
SRR3591706second leaf1.640
SRR3591707mature leaf0.637
SRR3591708Shoot apex7.835
SRR3591709Stem3.280
SRR3591710White floral bud307.569
SRR3591711White flower411.638
SRR3591712Green floral bud68.998
SRR3591713Yellow flower560.467
SRP173429 SRR8316895Juvenile bud stage 53.709
SRR8316896Juvenile bud stage 83.325
SRR8316897Juvenile bud stage 11.057
SRR8316894Third green stage 39.715
SRR8316900Third green stage 337.146
SRR8316901Third green stage 314.884
SRR8316898Complete white stage 723.896
SRR8316899Complete white stage 472.710
SRR8316903Complete white stage 918.684
SRR8316902Silver flowering stage918.688
SRR8316904Silver flowering stage903.407
SRR8316905Silver flowering stage635.472
SRR8316906Gold flowering stage 1680.965
SRR8316907Gold flowering stage 1740.294
SRR8316908Gold flowering stage 1097.501
SRP132670SRR6706286Control267.343
SRR6706287Light intensity 50%312.401
SRR6706288Light intensity 20%318.969
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1214.385
CNS0095593Slightly white alabastrum(diploid) 2159.219
CNS0095594Slightly white alabastrum(diploid) 3101.873
CNS0095595Whole white alabastrum(diploid) 2256.008
CNS0095596Whole white alabastrum(diploid) 3347.970
CNS0095597Whole white alabastrum(diploid) 4207.226
CNS0095598Silvery flower (diploied) 1740.786
CNS0095599Silvery flower (diploied) 2835.291
CNS0095600Silvery flower (diploied) 31741.562
CNS0095601Golden flower (diploid) 11349.213
CNS0095602Golden flower (diploid) 21528.881
CNS0095603Golden flower (diploid) 31545.192
CNS0095604Slightly white alabastrum(tetraploid) 1135.381
CNS0095605Slightly white alabastrum(tetraploid) 2130.540
CNS0095606Slightly white alabastrum(tetraploid) 3122.182
CNS0095607Whole white alabastrum(tetraploid) 195.354
CNS0095608Whole white alabastrum(tetraploid) 2171.923
CNS0095609Whole white alabastrum(tetraploid) 3332.074
CNS0095610Silvery flower (tetraploid) 11413.173
CNS0095611Silvery flower (tetraploid) 22159.681
CNS0095612Silvery flower (tetraploid) 32709.899
CNS0095613Golden flower (tetraploid) 13294.815
CNS0095614Golden flower (tetraploid) 22468.881
CNS0095615Golden flower (tetraploid) 33265.560
CRA001975CRR073297Stem 182.475
CRR073298Stem 280.204
CRR073299Stem 394.068
CRR073300Leaf 1215.086
CRR073301Leaf 2196.418
CRR073302Leaf 3341.120
CRR073303Juvenile bud 1404.300
CRR073304Juvenile bud 21171.819
CRR073305Juvenile bud 3305.398
CRR073306Third green 12548.014
CRR073307Third green 21911.616
CRR073308Third green 31739.213
CRR073309Second white 13500.956
CRR073310Second white 22367.669
CRR073311Second white 31946.264
CRR073312Silver flowering 12321.755
CRR073313Silver flowering 22661.321
CRR073314Silver flowering 32064.568
CRR073315Gold flowering 11.784
CRR073316Gold flowering 21.793
CRR073317Gold flowering 30.919
CRR073318Tawny withering 117.477
CRR073319Tawny withering 220.495
CRR073320Tawny withering 318.148