Gene detail

Detail information of GWHGAAZE008903

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274913.1	2.0935E-172	PREDICTED: N-carbamoylputrescine amidase [Vitis vinifera]
Swissprot	tr\|Q8VYF5\|NILP1_ARATH	1E-171	N-carbamoylputrescine amidase
trEMBL	tr\|D7TCT6\|D7TCT6_VITVI	1E-172	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28309.3}
TAIR10	AT2G27450.2	6E-137	nitrilase-like protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	96571801	96577546	-
GWHAAZE00000002	mRNA	96571801	96577546	-
GWHAAZE00000002	exon	96571801	96571973	-
GWHAAZE00000002	exon	96572056	96572152	-
GWHAAZE00000002	exon	96574524	96574690	-
GWHAAZE00000002	exon	96574927	96574960	-
GWHAAZE00000002	exon	96575067	96575113	-
GWHAAZE00000002	exon	96575197	96575348	-
GWHAAZE00000002	exon	96575496	96575587	-
GWHAAZE00000002	exon	96577370	96577546	-
GWHAAZE00000002	CDS	96577370	96577546	-
GWHAAZE00000002	CDS	96575496	96575587	-
GWHAAZE00000002	CDS	96575197	96575348	-
GWHAAZE00000002	CDS	96575067	96575113	-
GWHAAZE00000002	CDS	96574927	96574960	-
GWHAAZE00000002	CDS	96574524	96574690	-
GWHAAZE00000002	CDS	96572056	96572152	-
GWHAAZE00000002	CDS	96571801	96571973	-

Transcript Sequence
>GWHTAAZE008913 ATGAATTGTATTGAAGAAGAAATTGGAAGAAAGCTGCCTAGAATTGGTTTTATGGTGAAGTCAGGGTTAAGGAAAGGCTTTACACGAGGGTATGTTAACTTGGATGTGGTTATGGCCTTTATCATGATAAAATGGGTAAAGCTGGATCTACTGTCAGGAGGAAAAGTGAAATTCAGGGAACTATTTGAAGGCTATTACTTTTGTCAAGCACAAAGGGAGGACTTTTTTCTTCGAGCAAAACCTTACAAGGGTCACCCTACAATTCAGAGAATGCAGAAACTTGCAAAAGAATTAGGGGTTGTGATACCAGTTAGCTTCTTTGAGGAGGCGAATAATGCACATTACAATTCGATTGCCATAATTGATGCTGATGGAACTGATCTTGGACTTTATAGAAAGTCCCATATTCCAGATGGACCAGGCTACCAAGAAAAGTTTTACTTCAATCCAGGGGACACCGGATTTAAGGTTTTCCAGACTAAATTTGCAAAAATTGGAGTAGCAATATGCTGGGATCAGTGGTTTCCGGAGGCAGCCCGTGCTATGGTTCTTCAAGGTGCAGAGATACTGTTATACCCAACTGCGATAGGTTCTGAACCTCAAGATGATGGCATAGATTCTCGAGACCATTGGAGACGCGTTATGCAAGGACATGCCGGGGCTAATCTGGTGCCTCTAGTAGCTTCAAACCGTATAGGGAAGGAAGTGATCCAAACAGAGCATGGGAACAGTGAGATCACATTCTATGGCACCTCTTTTATAGCAGGACCCGCTGGTGAAATTGTCACGGATGCTGATGACAAAGATGAATCCGTTATTGTTGCAGAATTTGATTTAGAGAAAATTAAGTCCAAGAGAAATAGCTGGGGTATATTCCGAGATCGGCGTCCAGATCTATACAAGGTGCTTTTGACTTTGGATGGCAGCTACCCCTGTTGA

Network for GWHGAAZE008903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00795.23	CN_hydrolase	85	286	5.30E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12251	aguB	Metabolic pathways	map01100
K12251	aguB	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006596	biological_process	polyamine biosynthetic process
GO:0006807	biological_process	nitrogen compound metabolic process
GO:0050126	molecular_function	N-carbamoylputrescine amidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.432
	SRR3591706	second leaf	16.912
	SRR3591707	mature leaf	17.545
	SRR3591708	Shoot apex	28.289
	SRR3591709	Stem	28.781
	SRR3591710	White floral bud	42.080
	SRR3591711	White flower	54.907
	SRR3591712	Green floral bud	48.400
	SRR3591713	Yellow flower	46.843
SRP173429	SRR8316895	Juvenile bud stage	20.665
	SRR8316896	Juvenile bud stage	29.983
	SRR8316897	Juvenile bud stage	16.762
	SRR8316894	Third green stage	10.407
	SRR8316900	Third green stage	34.285
	SRR8316901	Third green stage	38.692
	SRR8316898	Complete white stage	18.681
	SRR8316899	Complete white stage	51.169
	SRR8316903	Complete white stage	28.191
	SRR8316902	Silver flowering stage	21.385
	SRR8316904	Silver flowering stage	21.985
	SRR8316905	Silver flowering stage	11.681
	SRR8316906	Gold flowering stage	34.725
	SRR8316907	Gold flowering stage	38.855
	SRR8316908	Gold flowering stage	42.695
SRP132670	SRR6706286	Control	30.445
	SRR6706287	Light intensity 50%	31.619
	SRR6706288	Light intensity 20%	33.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.681
	CNS0095593	Slightly white alabastrum(diploid) 2	34.487
	CNS0095594	Slightly white alabastrum(diploid) 3	29.983
	CNS0095595	Whole white alabastrum(diploid) 2	28.479
	CNS0095596	Whole white alabastrum(diploid) 3	27.267
	CNS0095597	Whole white alabastrum(diploid) 4	24.777
	CNS0095598	Silvery flower (diploied) 1	35.013
	CNS0095599	Silvery flower (diploied) 2	35.428
	CNS0095600	Silvery flower (diploied) 3	42.200
	CNS0095601	Golden flower (diploid) 1	30.126
	CNS0095602	Golden flower (diploid) 2	37.618
	CNS0095603	Golden flower (diploid) 3	35.942
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.063
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.169
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.455
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.372
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.356
	CNS0095610	Silvery flower (tetraploid) 1	61.647
	CNS0095611	Silvery flower (tetraploid) 2	54.159
	CNS0095612	Silvery flower (tetraploid) 3	36.961
	CNS0095613	Golden flower (tetraploid) 1	40.349
	CNS0095614	Golden flower (tetraploid) 2	52.660
	CNS0095615	Golden flower (tetraploid) 3	42.154
CRA001975	CRR073297	Stem 1	18.273
	CRR073298	Stem 2	15.831
	CRR073299	Stem 3	17.531
	CRR073300	Leaf 1	19.827
	CRR073301	Leaf 2	19.540
	CRR073302	Leaf 3	18.451
	CRR073303	Juvenile bud 1	14.195
	CRR073304	Juvenile bud 2	19.850
	CRR073305	Juvenile bud 3	12.181
	CRR073306	Third green 1	7.253
	CRR073307	Third green 2	6.454
	CRR073308	Third green 3	7.135
	CRR073309	Second white 1	6.683
	CRR073310	Second white 2	6.855
	CRR073311	Second white 3	5.934
	CRR073312	Silver flowering 1	4.374
	CRR073313	Silver flowering 2	3.802
	CRR073314	Silver flowering 3	4.569
	CRR073315	Gold flowering 1	15.581
	CRR073316	Gold flowering 2	15.841
	CRR073317	Gold flowering 3	8.705
	CRR073318	Tawny withering 1	15.177
	CRR073319	Tawny withering 2	21.933
	CRR073320	Tawny withering 3	13.258