Gene detail

Detail information of GWHGAAZE008918

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273209.1	0	PREDICTED: OTU domain-containing protein 5 [Vitis vinifera]
trEMBL	tr\|F6HHD7\|F6HHD7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51633.1}
TAIR10	AT2G27350.2	1E-121	OTU-like cysteine protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	96839249	96849274	+
GWHAAZE00000002	mRNA	96839249	96849274	+
GWHAAZE00000002	exon	96839249	96839905	+
GWHAAZE00000002	exon	96840642	96840803	+
GWHAAZE00000002	exon	96844464	96844541	+
GWHAAZE00000002	exon	96847378	96847456	+
GWHAAZE00000002	exon	96847539	96847684	+
GWHAAZE00000002	exon	96847848	96847917	+
GWHAAZE00000002	exon	96848018	96848224	+
GWHAAZE00000002	exon	96849063	96849274	+
GWHAAZE00000002	CDS	96839249	96839905	+
GWHAAZE00000002	CDS	96840642	96840803	+
GWHAAZE00000002	CDS	96844464	96844541	+
GWHAAZE00000002	CDS	96847378	96847456	+
GWHAAZE00000002	CDS	96847539	96847684	+
GWHAAZE00000002	CDS	96847848	96847917	+
GWHAAZE00000002	CDS	96848018	96848224	+
GWHAAZE00000002	CDS	96849063	96849274	+

Transcript Sequence
>GWHTAAZE008928 ATGACTAGGATTTTGGTTCAAAGAGGTTCTTCTGGTTCATCTTCTAATACAAATAGGTCCTCATCATCTTTGCCCAGTTCTTCTTCTTCAGCTCCACCTCAGCCTCAAGTTATTAGCTCCGAGGCTTCCTCAAAAGAAGAGGATATTGTAGAGCAAGTCCAAGAAACTGTCTCTGTGGATGAATTTGCAGGGAGTTCTGGTTCTTGTGTCAGTAATGAACCAAGAATTGAAGATCTTGCAACAGAAACTTTGCACAGTGAAGTGAATGATGATACAAAAGATGGAAATAATGATAATGTTGTGGGTTCAGGGGAAATGATAAAAGAATTTGGTGGGTTGAGGATTTCTGAGCAAGAAAATGTATCGAGTGGGTATTCTTTGCAGGCAGTTAGTGGGAGCTCGTATCCACCCGCCCCTCCCGTTCCACCCCCAATACCTTTTGCAGCTAGTGCAAATTCGCGGAGGTTTGTGCCGAGTAAAGCGAATAATGCTGGGAGGATTGGATCATCTAGGAGAGCAGCTGCTTGGCCTGTCGTTTCAACTAGGTCTTCACCGAATGGGTCTCGGCCTTCTTCTCCCAGGTCTCATTGTGAAAATGAGGGCTACAATAGTGCTGATGAACAGAGCCCTTGCTTTGGATCCTCCTATGATGACGCAGAGAGAGAGCGCCAGTTTGAGATTGATATAAGACGGGCAAAAGGTCTAGAGGTCAAACGTATGCTCGAGGATGGAAACTGTCTCTTTCGGGCTGTTGCAGATCAAGTCTACGGTGACTCTGAATTGTATGATTTGGTTAGGCAAATGTGCATAGACTATATGGAACGGGAAAGAGACCACTTTTCTCAATTTATGACAGAAGGTTTCACTTCTTATTGCAAGAGAAAGAGAAGGGACAAGGTCTATGGAAACAACATGGAGATTCAAGCTTTATCTGAAATGTACAATCGGCCAATCCATATATATTCCTATGGGATAGAACCTATCAACATATTCCACGGAAGCTATAATACGGACACACCTCCAATAAGGCTAAGTTACCATCATGGGAACCATTACAACTCACTTGTTGATCCACGACGATTGACGATTGGTGCAGGGCTTGGATTTAGCAGTCTGCAGGGGAGGAATATTGATAGGGATCAAATCAAAGCTGCCATCAAAGCTCAACAGGACCAGCAGATTGATAATGCAAATTTTAGTCTCTCCATGTTAATTTTTGAACTACAGGCACTTCTAGCTGAGGGCCGATTTTACTCTGATCTTGAGCTTACTGAGAAAGAGATAGAACGCATGGTGATGGAAGCTTCTAGGGCTGAGTACATCGCTGAAGACAAGTTCAATAAGCAACTTGGTCGCAGAGATTCTTCTACTTCGGGTGCCGAATCATCTTCTGGAGCCAGACCATCGGGAAGCGAGACAAATCTTGAGCATGGTTTGCCGGACACAGTTCTAAGCAGCAGTGTGCAGGTGGTACTGTCAATGGGGTTTAGCTATCTGCAGGCAATGGAGGCCTATAACATATTTGGGGACGACGTTGATTCTATGGTTTGCTACCTCTTAGAGACCAGCAGTAGCAGCAGCAGCAGACGCAAAGGCAAGGCAACTGAATGA

Network for GWHGAAZE008918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02338.20	OTU	243	352	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	pathway	mapID
K12655	OTUD5, DUBA	RIG-I-like receptor signaling pathway	map04622

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.122
	SRR3591706	second leaf	33.373
	SRR3591707	mature leaf	28.824
	SRR3591708	Shoot apex	44.712
	SRR3591709	Stem	63.899
	SRR3591710	White floral bud	71.135
	SRR3591711	White flower	94.126
	SRR3591712	Green floral bud	42.815
	SRR3591713	Yellow flower	86.549
SRP173429	SRR8316895	Juvenile bud stage	46.130
	SRR8316896	Juvenile bud stage	46.332
	SRR8316897	Juvenile bud stage	30.476
	SRR8316894	Third green stage	15.549
	SRR8316900	Third green stage	42.866
	SRR8316901	Third green stage	40.705
	SRR8316898	Complete white stage	28.671
	SRR8316899	Complete white stage	65.470
	SRR8316903	Complete white stage	51.150
	SRR8316902	Silver flowering stage	40.470
	SRR8316904	Silver flowering stage	47.619
	SRR8316905	Silver flowering stage	21.706
	SRR8316906	Gold flowering stage	70.373
	SRR8316907	Gold flowering stage	71.481
	SRR8316908	Gold flowering stage	75.535
SRP132670	SRR6706286	Control	48.026
	SRR6706287	Light intensity 50%	49.615
	SRR6706288	Light intensity 20%	50.255
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.711
	CNS0095593	Slightly white alabastrum(diploid) 2	39.832
	CNS0095594	Slightly white alabastrum(diploid) 3	38.575
	CNS0095595	Whole white alabastrum(diploid) 2	40.666
	CNS0095596	Whole white alabastrum(diploid) 3	25.462
	CNS0095597	Whole white alabastrum(diploid) 4	28.576
	CNS0095598	Silvery flower (diploied) 1	55.747
	CNS0095599	Silvery flower (diploied) 2	60.317
	CNS0095600	Silvery flower (diploied) 3	70.213
	CNS0095601	Golden flower (diploid) 1	55.668
	CNS0095602	Golden flower (diploid) 2	62.609
	CNS0095603	Golden flower (diploid) 3	67.336
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.993
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.940
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.977
	CNS0095610	Silvery flower (tetraploid) 1	75.163
	CNS0095611	Silvery flower (tetraploid) 2	56.834
	CNS0095612	Silvery flower (tetraploid) 3	63.130
	CNS0095613	Golden flower (tetraploid) 1	40.976
	CNS0095614	Golden flower (tetraploid) 2	54.946
	CNS0095615	Golden flower (tetraploid) 3	74.492
CRA001975	CRR073297	Stem 1	32.524
	CRR073298	Stem 2	29.557
	CRR073299	Stem 3	26.037
	CRR073300	Leaf 1	29.994
	CRR073301	Leaf 2	29.707
	CRR073302	Leaf 3	21.458
	CRR073303	Juvenile bud 1	25.387
	CRR073304	Juvenile bud 2	19.113
	CRR073305	Juvenile bud 3	22.880
	CRR073306	Third green 1	25.734
	CRR073307	Third green 2	25.477
	CRR073308	Third green 3	26.408
	CRR073309	Second white 1	13.640
	CRR073310	Second white 2	21.952
	CRR073311	Second white 3	21.239
	CRR073312	Silver flowering 1	16.622
	CRR073313	Silver flowering 2	16.179
	CRR073314	Silver flowering 3	15.550
	CRR073315	Gold flowering 1	13.639
	CRR073316	Gold flowering 2	22.561
	CRR073317	Gold flowering 3	12.115
	CRR073318	Tawny withering 1	44.325
	CRR073319	Tawny withering 2	41.110
	CRR073320	Tawny withering 3	42.497