Detail information of GWHGAAZE008933


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002273038.17.29534E-60PREDICTED: F-box protein At2g27310 [Vitis vinifera]
Swissprottr|Q9SIH5|FB322_ARATH3E-49Probable F-box protein At1g60180
trEMBLtr|F6HHD6|F6HHD6_VITVI3E-60Putative uncharacterized protein {ECO:0000313|EMBL:CCB51632.1}
TAIR10AT2G36090.11E-41F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9707017897070849+
GWHAAZE00000002mRNA9707017897070849+
GWHAAZE00000002exon9707017897070391+
GWHAAZE00000002exon9707043197070849+
GWHAAZE00000002CDS9707017897070391+
GWHAAZE00000002CDS9707043197070849+
Transcript Sequence

Network for GWHGAAZE008933

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box30640.00032
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud17.246
SRR3591711White flower53.359
SRR3591712Green floral bud0.000
SRR3591713Yellow flower68.916
SRP173429 SRR8316895Juvenile bud stage 0.242
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.062
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 16.162
SRR8316899Complete white stage 0.116
SRR8316903Complete white stage 21.585
SRR8316902Silver flowering stage278.503
SRR8316904Silver flowering stage365.749
SRR8316905Silver flowering stage239.524
SRR8316906Gold flowering stage 645.481
SRR8316907Gold flowering stage 614.859
SRR8316908Gold flowering stage 501.840
SRP132670SRR6706286Control0.776
SRR6706287Light intensity 50%0.305
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.099
CNS0095593Slightly white alabastrum(diploid) 20.327
CNS0095594Slightly white alabastrum(diploid) 30.459
CNS0095595Whole white alabastrum(diploid) 20.331
CNS0095596Whole white alabastrum(diploid) 30.395
CNS0095597Whole white alabastrum(diploid) 40.615
CNS0095598Silvery flower (diploied) 177.994
CNS0095599Silvery flower (diploied) 265.228
CNS0095600Silvery flower (diploied) 3343.385
CNS0095601Golden flower (diploid) 149.727
CNS0095602Golden flower (diploid) 2183.472
CNS0095603Golden flower (diploid) 3184.618
CNS0095604Slightly white alabastrum(tetraploid) 10.274
CNS0095605Slightly white alabastrum(tetraploid) 20.264
CNS0095606Slightly white alabastrum(tetraploid) 30.019
CNS0095607Whole white alabastrum(tetraploid) 10.430
CNS0095608Whole white alabastrum(tetraploid) 20.119
CNS0095609Whole white alabastrum(tetraploid) 30.318
CNS0095610Silvery flower (tetraploid) 1249.582
CNS0095611Silvery flower (tetraploid) 2306.852
CNS0095612Silvery flower (tetraploid) 3917.728
CNS0095613Golden flower (tetraploid) 1436.976
CNS0095614Golden flower (tetraploid) 2263.353
CNS0095615Golden flower (tetraploid) 3645.843
CRA001975CRR073297Stem 11.675
CRR073298Stem 21.159
CRR073299Stem 31.322
CRR073300Leaf 11.405
CRR073301Leaf 20.742
CRR073302Leaf 32.385
CRR073303Juvenile bud 12.263
CRR073304Juvenile bud 21.128
CRR073305Juvenile bud 31.128
CRR073306Third green 11567.534
CRR073307Third green 21177.713
CRR073308Third green 31159.658
CRR073309Second white 11685.674
CRR073310Second white 21761.539
CRR073311Second white 31484.214
CRR073312Silver flowering 11218.759
CRR073313Silver flowering 2943.199
CRR073314Silver flowering 31006.047
CRR073315Gold flowering 10.174
CRR073316Gold flowering 20.299
CRR073317Gold flowering 30.290
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.109
CRR073320Tawny withering 30.279