Detail information of GWHGAAZE008941


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFW65761.17.62397E-61hypothetical protein ZEAMMB73_526028 [Zea mays]
Swissprottr|Q9SJ44|UEV1C_ARATH1E-60Ubiquitin-conjugating enzyme E2 variant 1C
trEMBLtr|K7UQ17|K7UQ17_MAIZE3E-61Uncharacterized protein {ECO:0000313|EMBL:AFW65761.1, ECO:0000313|EnsemblPlants:GRMZM2G027378_P02}
TAIR10AT2G36060.15E-45MMS ZWEI homologue 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9732531397329906+
GWHAAZE00000002mRNA9732531397329906+
GWHAAZE00000002exon9732531397325516+
GWHAAZE00000002exon9732859697328738+
GWHAAZE00000002exon9732882897328945+
GWHAAZE00000002exon9732956697329634+
GWHAAZE00000002exon9732976697329906+
GWHAAZE00000002CDS9732531397325516+
GWHAAZE00000002CDS9732859697328738+
GWHAAZE00000002CDS9732882897328945+
GWHAAZE00000002CDS9732956697329634+
GWHAAZE00000002CDS9732976697329906+
Transcript Sequence

Network for GWHGAAZE008941

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0049


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con531383.60E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10704UBE2V Toll and Imd signaling pathway map04624

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf109.920
SRR3591706second leaf56.401
SRR3591707mature leaf66.943
SRR3591708Shoot apex92.329
SRR3591709Stem115.134
SRR3591710White floral bud115.940
SRR3591711White flower129.102
SRR3591712Green floral bud108.293
SRR3591713Yellow flower139.457
SRP173429 SRR8316895Juvenile bud stage 67.124
SRR8316896Juvenile bud stage 94.209
SRR8316897Juvenile bud stage 47.687
SRR8316894Third green stage 37.488
SRR8316900Third green stage 109.609
SRR8316901Third green stage 116.925
SRR8316898Complete white stage 68.740
SRR8316899Complete white stage 167.139
SRR8316903Complete white stage 101.419
SRR8316902Silver flowering stage67.332
SRR8316904Silver flowering stage83.474
SRR8316905Silver flowering stage41.362
SRR8316906Gold flowering stage 141.806
SRR8316907Gold flowering stage 141.218
SRR8316908Gold flowering stage 146.769
SRP132670SRR6706286Control112.889
SRR6706287Light intensity 50%107.421
SRR6706288Light intensity 20%115.042
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1105.455
CNS0095593Slightly white alabastrum(diploid) 2116.456
CNS0095594Slightly white alabastrum(diploid) 3105.667
CNS0095595Whole white alabastrum(diploid) 2102.310
CNS0095596Whole white alabastrum(diploid) 395.482
CNS0095597Whole white alabastrum(diploid) 488.368
CNS0095598Silvery flower (diploied) 1105.928
CNS0095599Silvery flower (diploied) 2102.251
CNS0095600Silvery flower (diploied) 3126.472
CNS0095601Golden flower (diploid) 1107.018
CNS0095602Golden flower (diploid) 2125.267
CNS0095603Golden flower (diploid) 3119.138
CNS0095604Slightly white alabastrum(tetraploid) 198.251
CNS0095605Slightly white alabastrum(tetraploid) 286.147
CNS0095606Slightly white alabastrum(tetraploid) 3121.429
CNS0095607Whole white alabastrum(tetraploid) 170.500
CNS0095608Whole white alabastrum(tetraploid) 264.335
CNS0095609Whole white alabastrum(tetraploid) 374.569
CNS0095610Silvery flower (tetraploid) 1102.917
CNS0095611Silvery flower (tetraploid) 2102.698
CNS0095612Silvery flower (tetraploid) 3118.303
CNS0095613Golden flower (tetraploid) 1107.281
CNS0095614Golden flower (tetraploid) 2105.227
CNS0095615Golden flower (tetraploid) 3121.833
CRA001975CRR073297Stem 1148.660
CRR073298Stem 2147.305
CRR073299Stem 3163.332
CRR073300Leaf 1162.790
CRR073301Leaf 2172.389
CRR073302Leaf 3172.842
CRR073303Juvenile bud 1189.691
CRR073304Juvenile bud 2165.878
CRR073305Juvenile bud 3170.630
CRR073306Third green 1180.762
CRR073307Third green 2181.782
CRR073308Third green 3171.059
CRR073309Second white 1227.488
CRR073310Second white 2157.942
CRR073311Second white 3116.902
CRR073312Silver flowering 1154.653
CRR073313Silver flowering 2205.679
CRR073314Silver flowering 3125.434
CRR073315Gold flowering 1118.745
CRR073316Gold flowering 2128.173
CRR073317Gold flowering 3142.285
CRR073318Tawny withering 1172.761
CRR073319Tawny withering 2192.973
CRR073320Tawny withering 3163.247