Gene detail

Detail information of GWHGAAZE008947

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093669.1	0	PREDICTED: inositol oxygenase 2-like [Sesamum indicum]
Swissprot	tr\|Q8L799\|MIOX1_ARATH	2E-168	Inositol oxygenase 1
trEMBL	tr\|W9QX09\|W9QX09_9ROSA	3E-179	Inositol oxygenase 2 {ECO:0000313\|EMBL:EXB24695.1}
TAIR10	AT1G14520.1	5E-134	myo-inositol oxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	97569637	97571289	+
GWHAAZE00000002	mRNA	97569637	97571289	+
GWHAAZE00000002	exon	97569637	97569737	+
GWHAAZE00000002	exon	97569819	97569900	+
GWHAAZE00000002	exon	97569985	97570189	+
GWHAAZE00000002	exon	97570282	97570394	+
GWHAAZE00000002	exon	97570550	97570672	+
GWHAAZE00000002	exon	97570764	97570833	+
GWHAAZE00000002	exon	97570920	97570998	+
GWHAAZE00000002	exon	97571095	97571176	+
GWHAAZE00000002	exon	97571263	97571289	+
GWHAAZE00000002	CDS	97569637	97569737	+
GWHAAZE00000002	CDS	97569819	97569900	+
GWHAAZE00000002	CDS	97569985	97570189	+
GWHAAZE00000002	CDS	97570282	97570394	+
GWHAAZE00000002	CDS	97570550	97570672	+
GWHAAZE00000002	CDS	97570764	97570833	+
GWHAAZE00000002	CDS	97570920	97570998	+
GWHAAZE00000002	CDS	97571095	97571176	+
GWHAAZE00000002	CDS	97571263	97571289	+

Transcript Sequence
>GWHTAAZE008957 TTGGAGGAAAAGGAAGGCAAAGTGCCATCCGATTATGATGAAATGAAGTCAGATGGTGGATTTGTGGTACCGGAAAATAATTCATATGGCAACTCATTCAGGGATTATAACGCAGAAACTGAGAGGAGAAAGATAGTTGAGGAATTTTATAGATTGAGTCACATTAATCAAACATACGATTTTGTGAAGAGGATGAGAGAAGAGTATGGGAAGTTGAACAAAGTGGAAATCAGCATTTGGGAATGTTGCGAGCTTTTGAATGAAGTGGTAGACGATAGTGATCCTGACTTAGACGAGCCTCAAATTGAGCACTTGTTACAAACTGCCGAAGCTATTAGGAAAGACTATCCTAATGAAGATTGGTTGCATTTGACTGCTCTTATTCATGATCTTGGTAAAGTGCTCCTTCTTCCTAGCTTCGGTGGACTCCGTCAATGGGCTGTCGTTGGTGACACGTTCCCCCTTGGATGCGCTTTTGATGAGTCAATTGTTCATCACAAGTATTTCAAGGACAACGAGGACTACAACAATCCAGCTTATAGCACCAAAAATGGTATTTACAAAGAACGATGCGGGCTAGACAATGTCGTGATATCTTGGGGACATGATGACTACATGTACTTGGTGGCTAAGGAAAATAACACTACATTACCGTCAGCTGGATTGTTCATCATCCGCTACCACTCTTTTTATCCGTTACACAAATCGGGGGCATATAAGTACCTGATGAATGAGGAAGACTTGGAGAACCTGAAATGGCTTAAGATATTCAACAAATATGATCTCTATAGTAAGAGCAAAGTTCGCGTTGATGTTGAAAAGGTGAAACCATACTATTTATCCCTCATTGAAAAGTATTTTCCACCAAAGCTCAGGTGGTGA

Network for GWHGAAZE008947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05153.16	MIOX	45	293	2.00E-122

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00469	MIOX	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562

Gene Ontology

GO term	Ontology	Name
GO:0019310	biological_process	inositol catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005737	cellular_component	cytoplasm
GO:0005506	molecular_function	iron ion binding
GO:0050113	molecular_function	inositol oxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.072
	SRR3591706	second leaf	0.158
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.401
	SRR3591711	White flower	8.731
	SRR3591712	Green floral bud	0.943
	SRR3591713	Yellow flower	45.828
SRP173429	SRR8316895	Juvenile bud stage	0.124
	SRR8316896	Juvenile bud stage	1.321
	SRR8316897	Juvenile bud stage	2.155
	SRR8316894	Third green stage	0.795
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.738
	SRR8316898	Complete white stage	0.160
	SRR8316899	Complete white stage	0.995
	SRR8316903	Complete white stage	0.469
	SRR8316902	Silver flowering stage	0.952
	SRR8316904	Silver flowering stage	0.825
	SRR8316905	Silver flowering stage	0.581
	SRR8316906	Gold flowering stage	12.193
	SRR8316907	Gold flowering stage	7.796
	SRR8316908	Gold flowering stage	5.753
SRP132670	SRR6706286	Control	0.884
	SRR6706287	Light intensity 50%	0.555
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.561
	CNS0095593	Slightly white alabastrum(diploid) 2	0.146
	CNS0095594	Slightly white alabastrum(diploid) 3	1.048
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.050
	CNS0095598	Silvery flower (diploied) 1	1.401
	CNS0095599	Silvery flower (diploied) 2	0.447
	CNS0095600	Silvery flower (diploied) 3	0.872
	CNS0095601	Golden flower (diploid) 1	2.297
	CNS0095602	Golden flower (diploid) 2	8.908
	CNS0095603	Golden flower (diploid) 3	7.808
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.226
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.112
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.310
	CNS0095611	Silvery flower (tetraploid) 2	0.547
	CNS0095612	Silvery flower (tetraploid) 3	3.420
	CNS0095613	Golden flower (tetraploid) 1	19.747
	CNS0095614	Golden flower (tetraploid) 2	9.662
	CNS0095615	Golden flower (tetraploid) 3	30.292
CRA001975	CRR073297	Stem 1	0.583
	CRR073298	Stem 2	3.623
	CRR073299	Stem 3	1.366
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.045
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	4.412
	CRR073310	Second white 2	3.235
	CRR073311	Second white 3	5.398
	CRR073312	Silver flowering 1	2.626
	CRR073313	Silver flowering 2	1.350
	CRR073314	Silver flowering 3	2.152
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000