Gene detail

Detail information of GWHGAAZE008948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093669.1	0	PREDICTED: inositol oxygenase 2-like [Sesamum indicum]
Swissprot	tr\|Q5Z8T3\|MIOX_ORYSJ	1E-171	Probable inositol oxygenase
trEMBL	tr\|C6K2L2\|C6K2L2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008650.1.1}
TAIR10	AT1G14520.2	1E-135	myo-inositol oxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	97585894	97587710	+
GWHAAZE00000002	mRNA	97585894	97587710	+
GWHAAZE00000002	exon	97585894	97585924	+
GWHAAZE00000002	exon	97586011	97586113	+
GWHAAZE00000002	exon	97586214	97586295	+
GWHAAZE00000002	exon	97586381	97586585	+
GWHAAZE00000002	exon	97586679	97586791	+
GWHAAZE00000002	exon	97586961	97587083	+
GWHAAZE00000002	exon	97587183	97587252	+
GWHAAZE00000002	exon	97587356	97587434	+
GWHAAZE00000002	exon	97587514	97587595	+
GWHAAZE00000002	exon	97587684	97587710	+
GWHAAZE00000002	CDS	97585894	97585924	+
GWHAAZE00000002	CDS	97586011	97586113	+
GWHAAZE00000002	CDS	97586214	97586295	+
GWHAAZE00000002	CDS	97586381	97586585	+
GWHAAZE00000002	CDS	97586679	97586791	+
GWHAAZE00000002	CDS	97586961	97587083	+
GWHAAZE00000002	CDS	97587183	97587252	+
GWHAAZE00000002	CDS	97587356	97587434	+
GWHAAZE00000002	CDS	97587514	97587595	+
GWHAAZE00000002	CDS	97587684	97587710	+

Transcript Sequence
>GWHTAAZE008958 ATGACTATCCTCATTGAGCAATCTCACCTCGGGTCGGAGGAAAAGGATAACAAAGTGCAATTTGATTTTGATGAAAAGAAGTTAGACGGTGGATTTGAGTTGCCAGAAAATAATTCATACGGCAACTCATTCAGGGATTACAATGCAGAGACTGAGCGAAGCAAGATAGTCGAGGAATTTTACAGATTGAGTCATATTAACCAAACATATGATTTAGTGAAGAGGATGAGGGAAGAGTATGGGAAGTTGGACAAAGTGGAAATGAGCATTTGGGAATGTTGTGAGCTTTTGAATGAAGTGGTGGATGATAGTGATCCTGACTTAGATGAGCCTCAAATTGAACACTTGTTGCAAACTGCAGAAGCTATTAGGAAAGACCATCCTAATGAAGATTGGTTGCACTTGACTGCTCTTATTCATGATCTTGGCAAAGTGCTGCTTCTTCCTAGCTTTGGAGGACTCCCTCAATGGGCTGTTGTTGGTGACACATTCCCCCTTGGATGCGCTTTCGATGAATCAATTGTTCATCACCAGTATTTCAAGGACAATGAGGACTACAAGAATCCAGCTTATAACACCAAAAATGGCATTTACAAAGAAGGATGCGGGCTAGACAATGTCGTGATGTCTTGGGGACATGATGACTACATGTACATGGTGGCCAAGGAAAATAAGACTACTCTACCATCAGCTGGATTATTCATCATCCGCTACCACTCTTTTTATCCGCTACACAGATCGGGGGCATATAAACACCTGATGAATGAGGAGGACATGGAAAATCTTAAATGGCTTAAGATATTCAACAAATATGATCTCTACAGTAAGAGCAAAGTTCGCATTGATGTCGAAAAGGTGAAACCATACTATTTGTCCCTCATTGAAAAGTACTTTCCACCAAAGCTCAGGTGGTGA

Network for GWHGAAZE008948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05153.16	MIOX	56	304	3.50E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00469	MIOX	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Inositol phosphate metabolism	map00562

Gene Ontology

GO term	Ontology	Name
GO:0019310	biological_process	inositol catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005737	cellular_component	cytoplasm
GO:0005506	molecular_function	iron ion binding
GO:0050113	molecular_function	inositol oxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.290
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	65.062
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.170
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.036
	SRR8316907	Gold flowering stage	0.345
	SRR8316908	Gold flowering stage	0.109
SRP132670	SRR6706286	Control	0.084
	SRR6706287	Light intensity 50%	0.074
	SRR6706288	Light intensity 20%	0.074
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.464
	CNS0095593	Slightly white alabastrum(diploid) 2	0.273
	CNS0095594	Slightly white alabastrum(diploid) 3	0.606
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.123
	CNS0095598	Silvery flower (diploied) 1	0.315
	CNS0095599	Silvery flower (diploied) 2	0.584
	CNS0095600	Silvery flower (diploied) 3	0.056
	CNS0095601	Golden flower (diploid) 1	2.951
	CNS0095602	Golden flower (diploid) 2	3.016
	CNS0095603	Golden flower (diploid) 3	3.539
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.265
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.181
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.054
	CNS0095611	Silvery flower (tetraploid) 2	1.084
	CNS0095612	Silvery flower (tetraploid) 3	0.381
	CNS0095613	Golden flower (tetraploid) 1	3.521
	CNS0095614	Golden flower (tetraploid) 2	1.232
	CNS0095615	Golden flower (tetraploid) 3	26.129
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.097
	CRR073301	Leaf 2	0.092
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.092
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.099
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.415
	CRR073313	Silver flowering 2	1.392
	CRR073314	Silver flowering 3	1.211
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.162
	CRR073320	Tawny withering 3	0.000