Gene detail

Detail information of GWHGAAZE008962

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011090358.1	PREDICTED: vacuolar protein sorting-associated protein 4-like [Sesamum indicum]
Swissprot	tr\|Q9ZNT0\|VPS4_ARATH	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|M5WHD1\|M5WHD1_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ08663.1}
TAIR10	AT2G27600.1	AAA-type ATPase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98078198	98097202	+
GWHAAZE00000002	mRNA	98078198	98097202	+
GWHAAZE00000002	exon	98078198	98078669	+
GWHAAZE00000002	exon	98082919	98083024	+
GWHAAZE00000002	exon	98085280	98085478	+
GWHAAZE00000002	exon	98092121	98092189	+
GWHAAZE00000002	exon	98092360	98092434	+
GWHAAZE00000002	exon	98093246	98093344	+
GWHAAZE00000002	exon	98093918	98094073	+
GWHAAZE00000002	exon	98097077	98097202	+
GWHAAZE00000002	CDS	98078198	98078669	+
GWHAAZE00000002	CDS	98082919	98083024	+
GWHAAZE00000002	CDS	98085280	98085478	+
GWHAAZE00000002	CDS	98092121	98092189	+
GWHAAZE00000002	CDS	98092360	98092434	+
GWHAAZE00000002	CDS	98093246	98093344	+
GWHAAZE00000002	CDS	98093918	98094073	+
GWHAAZE00000002	CDS	98097077	98097202	+

Transcript Sequence
>GWHTAAZE008972 ATGTATAGCAATTTCAAAGAACAAGCGATCGAGTACGTAAAGCAAGCAGTACAGGAAGACAACTCCGGCAACTATGCCAAAGCCTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACTCACCTCAAGTACGAGAAAAACCCTAAGATTAAGGAGGCGATCACGCAGAAATTCACCGAGTACCTCCGCCGAGCCGAGGAGATCCGCGCCGTCCTCGACGATGGAGGCCCCGGTCCGGCGGCCAACGGAGATGCGGCGGTGGCGACGAGGCCGAAGACGAAGCCGAAGGACGGCGAGGGAGGTGGTGATGGTGATGGAGAGAAGGATAAACTTAGGGCGGGACTGAACTCGGCGATTGTTAGGGAGAAACCTAATGTGAAGTGGAATGATGTTGCTGGATTGGAGAGTGCTAAGCAGGCCTTGCAGGAGGCGGTTATTTTGCCGGTTAAGTTTCCTCAGTTCTTTACTGGCAAGAGGCGACCATGGAGAGCTTTTCTTTTGTATGGTCCACCTGGAACCGGAAAATCATACTTAGCTAAGGCTGTTGCAACAGAAGCAGACTCGACATTTTTCAGCGTTTCTTCTTCAGATCTGGTTTCAAAGTGGATGGGCGAAAGTGAAAAGCTTGTTTCAAATCTTTTTCAAATGGCTCGGGAAAGTGCTCCTTCTATCATCTTTGTTGATGAAATAGATTCGTTATGTGGCCAACGAGGAGAAGGCAACGAGAGTGAAGCTTCTAGACGTATCAAAACAGAACTGCTTGTGCAGATGCAGGGTGTGGGCCATAATGATGATAAAGTTCTTGTTCTTGCAGCAACAAATACTCCGTATGCTCTAGATCAGGCCATCAGGCGACGATTTGACAAGCGTATATATATACCCCTACCAGATGCGAAGGCCCGGCAGCACATGTTCAAAGTGCATTTAGGAGATACCCCCCATAACTTGACTGAAAGCGACTTTGAAAGCTTGGGCCGCAAGACAGAAGGGTTTTCTGGTTCTGATGTAGCTGTTTGTGTTAAAGATGTTCTATTTGAACCTGTTCGGAAAACCCAAGATGCCATGTTCTTTGTTAAGACAAATGGCGGTCTATGGGTGCCTTGTGGGCCAAAGCAACCAGGTGCGGTCCAGACCACTATGCAAGAACTTGCTGCACAAGGACTTGCTTCACAGATTAGTCCACCTCCGATTGCAAAAGCAGATTTTGACAAGGTTCTTGCGAGGCAGAGGCCTACAGTGAGCAAATCTGACCTCGAAGTGCACGAGAGATTTACTAAAGAGTTTGGAGAGGAAGGCTAA

Network for GWHGAAZE008962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04212.19	MIT	7	70	3.80E-21
PF00004.30	AAA	167	296	2.80E-43
PF09336.11	Vps4_C	366	430	1.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12196	VPS4	Endocytosis	map04144
K12196	VPS4	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.579
	SRR3591706	second leaf	44.967
	SRR3591707	mature leaf	61.436
	SRR3591708	Shoot apex	51.300
	SRR3591709	Stem	98.109
	SRR3591710	White floral bud	97.525
	SRR3591711	White flower	106.759
	SRR3591712	Green floral bud	70.596
	SRR3591713	Yellow flower	101.672
SRP173429	SRR8316895	Juvenile bud stage	39.646
	SRR8316896	Juvenile bud stage	57.678
	SRR8316897	Juvenile bud stage	25.794
	SRR8316894	Third green stage	22.694
	SRR8316900	Third green stage	73.070
	SRR8316901	Third green stage	80.578
	SRR8316898	Complete white stage	61.311
	SRR8316899	Complete white stage	139.767
	SRR8316903	Complete white stage	71.263
	SRR8316902	Silver flowering stage	50.564
	SRR8316904	Silver flowering stage	67.566
	SRR8316905	Silver flowering stage	33.296
	SRR8316906	Gold flowering stage	96.733
	SRR8316907	Gold flowering stage	95.689
	SRR8316908	Gold flowering stage	102.818
SRP132670	SRR6706286	Control	125.508
	SRR6706287	Light intensity 50%	119.067
	SRR6706288	Light intensity 20%	119.826
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.605
	CNS0095593	Slightly white alabastrum(diploid) 2	57.578
	CNS0095594	Slightly white alabastrum(diploid) 3	53.654
	CNS0095595	Whole white alabastrum(diploid) 2	54.028
	CNS0095596	Whole white alabastrum(diploid) 3	44.346
	CNS0095597	Whole white alabastrum(diploid) 4	60.086
	CNS0095598	Silvery flower (diploied) 1	79.983
	CNS0095599	Silvery flower (diploied) 2	73.733
	CNS0095600	Silvery flower (diploied) 3	138.364
	CNS0095601	Golden flower (diploid) 1	72.491
	CNS0095602	Golden flower (diploid) 2	130.208
	CNS0095603	Golden flower (diploid) 3	124.374
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.016
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.349
	CNS0095606	Slightly white alabastrum(tetraploid) 3	100.455
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.695
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.173
	CNS0095610	Silvery flower (tetraploid) 1	153.116
	CNS0095611	Silvery flower (tetraploid) 2	134.459
	CNS0095612	Silvery flower (tetraploid) 3	101.657
	CNS0095613	Golden flower (tetraploid) 1	90.259
	CNS0095614	Golden flower (tetraploid) 2	117.671
	CNS0095615	Golden flower (tetraploid) 3	123.100
CRA001975	CRR073297	Stem 1	75.039
	CRR073298	Stem 2	70.600
	CRR073299	Stem 3	85.631
	CRR073300	Leaf 1	93.252
	CRR073301	Leaf 2	88.044
	CRR073302	Leaf 3	80.299
	CRR073303	Juvenile bud 1	113.870
	CRR073304	Juvenile bud 2	107.327
	CRR073305	Juvenile bud 3	114.029
	CRR073306	Third green 1	93.510
	CRR073307	Third green 2	87.976
	CRR073308	Third green 3	95.616
	CRR073309	Second white 1	75.491
	CRR073310	Second white 2	94.723
	CRR073311	Second white 3	76.573
	CRR073312	Silver flowering 1	73.170
	CRR073313	Silver flowering 2	59.264
	CRR073314	Silver flowering 3	66.351
	CRR073315	Gold flowering 1	90.124
	CRR073316	Gold flowering 2	102.576
	CRR073317	Gold flowering 3	93.626
	CRR073318	Tawny withering 1	96.633
	CRR073319	Tawny withering 2	94.057
	CRR073320	Tawny withering 3	82.173