Gene detail

Detail information of GWHGAAZE008965

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006487971.1	PREDICTED: protein HIRA-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q652L2\|HIRA_ORYSJ	Protein HIRA
trEMBL	tr\|A0A067ESG5\|A0A067ESG5_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO58053.1}
TAIR10	AT3G44530.2	homolog of histone chaperone HIRA

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98139097	98144372	+
GWHAAZE00000002	mRNA	98139097	98144372	+
GWHAAZE00000002	exon	98139097	98139579	+
GWHAAZE00000002	exon	98141023	98141298	+
GWHAAZE00000002	exon	98141964	98142215	+
GWHAAZE00000002	exon	98142474	98142871	+
GWHAAZE00000002	exon	98143364	98144372	+
GWHAAZE00000002	five_prime_UTR	98139097	98139444	+
GWHAAZE00000002	CDS	98139445	98139579	+
GWHAAZE00000002	CDS	98141023	98141298	+
GWHAAZE00000002	CDS	98141964	98142215	+
GWHAAZE00000002	CDS	98142474	98142871	+
GWHAAZE00000002	CDS	98143364	98144372	+

Transcript Sequence
>GWHTAAZE008975 TTAGCACTCAAAAACAGTGCTAAAATTTGCACAATTCCTTGTGCCGCTTACAAATCTTTACCCTCCTCGCTCGGTAGAATATTTTGATTCCTTTTAGATTAGATTTGACCGTTAAAGAAAGGGCCTTTTTTTTTCTTTTTTTTTCCAGTGTTCTAGGGTTTTTCAGTGTTTCATGTAATCTCAACTGGGTTACTAAATTTGTGTTTCTTTTAAAGATTCTCTTTCTTCTTTCAATGTTATTAGGGTTTTTGTTGCTGCAATTACCATGAATTTGGATACCCCTTTCGTGGGTTTTCAAGATTCAATTTGAAAAGGGTTGTCTTTGGGATTTCATAAGAAGAAAGGTGAATTGATTGATTAATTGATAGATTGAAGATGATAGCAGAAAAACCCAGTTGGGTTAAGCATGAGGGTATGCAGATTTTCTCTATTGATATTCAGCCTGGTGGGCTTAGGTTTGCCACTGGTGGTGGGGATCATAAGGTTCGAATTTGGAATATGAAATACGTCGGTAGGAACATGGAAGCTGTTGAATCGACAACACAACTTCTTGCAACCCTTCGTGATCATTTTGGGTCAGTCAATTGCGTTAGGTGGGCTAAGCACAGCCGGTATTTGGCATCGGGGTCAGATGACCAGGCGATTCAGATTCACGAGAGGAAGCCTGGTTCAGGAACCACCGAGTTTGGTAGTGGAGAACCACCAGATATTGAGAATTGGAAAGTTGCTATGACTTTGAGAGGACACACTGCAGACGTGGTGGATCTTAATTGGTCGCCAGATGACTCAATATTGGCAAGTGGGAGTTTGGATAACACTATCCATATTTGGAATATGAGCAACGGCATGTGCACTGCTGTTCTCAGGGGCCACTCCAGTCTGGTTAAAGGGGTTACGTGGGATCCCATTGGTTCCTTCATAGCAAGTCAATCAGATGACAAGACTGTAATCATTTGGCGAACAAGCGACTGGAGCCTTGCTCATAAGACTGATGGGCACTGGGCGAAATCTCTTGGGTCTACCTTCTTTAGGCGGCTTGGGTGGTCACCATGCGGCCATTTTATAACCACAACTCATGGTTACCAGAAGCCGAGGCATTCGGCACCTGTTCTAGAGAGAGGAGAGTGGTCCGCCACTTTTGACTTCTTAGGGCACAATGCCCCTATTATTGTTGTGAAGTTTAACCATTCGATGTTTAGAAGGAATCCATCAAATGCTGAGGAAGTAAAAACTTCATCTGTGGGGTGGACTAATGGGAATTCTAAGACTGGAGGAAAAGAAACACAGCCATATAATATTATTGCAATAGGGAGTCAGGACCGCACTATAACTGTTTGGACGACTGCAAGTGCTCGCCCTCTTTTTGTGGCTAAGCATTTCTTTTCTCAAAGTGTTGTAGATTTGTCCTGGAGCCCCGATGGATATTCACTATTCGCTTGTTCCTTGGACGGGTCAGTGGCAACTTTCCACTTTGAGGTGAGTGAACTCGGCCACAGGCTAACCGATGCAGAGTTAGAGGAGTTAAAGAGAAACCGCTATGGTGATGTGAGAGGTCGACAGTCAAACTTGGCAGAAAGTCCTGCACAGCTATTGCTCGAAGCAGCTTCGGCTAAGCAAACTACAACCAAAAAAGTCACTACAGAAGTCCTAACAAATACGACGTCCTTAAAACCATCTGCTGATTTGCGCATTTCAACAAACGCTTCCGAATCTCAAATTGATGACAAAAAGAGAAACACATTAAATAAAGCGGTCCCTTCTGCCCAAGTGCGTACTCCCGTGAACCAAAGAGCATATAGGCGCCCTGATGGGCGTAAGAGGATCATCCCGGAAGCAGTTGGGGTGCCCTTACCGGAGGAAAACATCTCGAGTATTGCTCAATATCAAGAAAATGATATCCTCCCCAAGTCATCGGATCCTAAGAAAGATGATAACATTCAAGATGTTTCTTTGAGAAGAACACTAGGTGGAACTTCTGATATAAGGGAGCGTTTGGGTGTCACTGCTAGGGCTACTATTAGTGAGAATCTGGTCATTGAAAAGGTTCCTGTTAGTGTTGAAGAGAAGGGTAGTTTAGTGAATTCGGGTTCCGGGGGTGGTGGTGATCTTTGTATTAGGGTTTCCGATAAGAAGGAAGGGGAGGATGCATTACCAGTTTGCTTGGAAGCTCGTGCTAAAGAACGTGCTGCTAATGACGTCGTTGTGGGTAATACATATACAATGAAAGAAACGGAGGTCACGTGTACAAGAGGGACAGAGACTCTTTGGTCTGATAGGATCTCCGGAAAGGTAACGGTTTTGGCTGGAAATGCTAACTTCTGGGCTATTGGATGTGAAGATGGATGCCTACAGGTTAGTAATGAAATTTTGAACAGTTCATTGCTTATGATGCTTTATAATGCTCTTGTTAAGTTTTAA

Network for GWHGAAZE008965

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	21	49	0.019
PF00400.33	WD40	65	100	7.40E-05
PF00400.33	WD40	127	161	1.00E-07
PF00400.33	WD40	166	202	1.80E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.062
	SRR3591706	second leaf	5.703
	SRR3591707	mature leaf	8.289
	SRR3591708	Shoot apex	9.404
	SRR3591709	Stem	9.306
	SRR3591710	White floral bud	7.948
	SRR3591711	White flower	7.904
	SRR3591712	Green floral bud	7.574
	SRR3591713	Yellow flower	5.006
SRP173429	SRR8316895	Juvenile bud stage	4.991
	SRR8316896	Juvenile bud stage	5.751
	SRR8316897	Juvenile bud stage	3.010
	SRR8316894	Third green stage	3.036
	SRR8316900	Third green stage	7.537
	SRR8316901	Third green stage	6.570
	SRR8316898	Complete white stage	2.735
	SRR8316899	Complete white stage	10.019
	SRR8316903	Complete white stage	5.002
	SRR8316902	Silver flowering stage	2.267
	SRR8316904	Silver flowering stage	4.813
	SRR8316905	Silver flowering stage	1.578
	SRR8316906	Gold flowering stage	6.168
	SRR8316907	Gold flowering stage	4.922
	SRR8316908	Gold flowering stage	6.197
SRP132670	SRR6706286	Control	11.074
	SRR6706287	Light intensity 50%	11.017
	SRR6706288	Light intensity 20%	11.522
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.496
	CNS0095593	Slightly white alabastrum(diploid) 2	1.530
	CNS0095594	Slightly white alabastrum(diploid) 3	2.117
	CNS0095595	Whole white alabastrum(diploid) 2	2.865
	CNS0095596	Whole white alabastrum(diploid) 3	2.095
	CNS0095597	Whole white alabastrum(diploid) 4	1.697
	CNS0095598	Silvery flower (diploied) 1	7.101
	CNS0095599	Silvery flower (diploied) 2	4.710
	CNS0095600	Silvery flower (diploied) 3	10.299
	CNS0095601	Golden flower (diploid) 1	3.575
	CNS0095602	Golden flower (diploid) 2	9.114
	CNS0095603	Golden flower (diploid) 3	8.299
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.373
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.834
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.974
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.636
	CNS0095610	Silvery flower (tetraploid) 1	8.037
	CNS0095611	Silvery flower (tetraploid) 2	8.208
	CNS0095612	Silvery flower (tetraploid) 3	5.945
	CNS0095613	Golden flower (tetraploid) 1	2.398
	CNS0095614	Golden flower (tetraploid) 2	7.026
	CNS0095615	Golden flower (tetraploid) 3	6.606
CRA001975	CRR073297	Stem 1	8.993
	CRR073298	Stem 2	7.698
	CRR073299	Stem 3	7.179
	CRR073300	Leaf 1	7.836
	CRR073301	Leaf 2	6.295
	CRR073302	Leaf 3	6.619
	CRR073303	Juvenile bud 1	7.396
	CRR073304	Juvenile bud 2	4.525
	CRR073305	Juvenile bud 3	11.518
	CRR073306	Third green 1	2.209
	CRR073307	Third green 2	2.455
	CRR073308	Third green 3	3.145
	CRR073309	Second white 1	2.255
	CRR073310	Second white 2	3.695
	CRR073311	Second white 3	3.929
	CRR073312	Silver flowering 1	3.034
	CRR073313	Silver flowering 2	2.852
	CRR073314	Silver flowering 3	2.177
	CRR073315	Gold flowering 1	3.286
	CRR073316	Gold flowering 2	7.242
	CRR073317	Gold flowering 3	5.165
	CRR073318	Tawny withering 1	3.951
	CRR073319	Tawny withering 2	4.138
	CRR073320	Tawny withering 3	4.463