Gene detail

Detail information of GWHGAAZE008968

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008228919.1	7.5009E-160	PREDICTED: fatty acyl-CoA reductase 3-like isoform X2 [Prunus mume]
Swissprot	tr\|Q93ZB9\|FACR3_ARATH	2E-75	Fatty acyl-CoA reductase 3
trEMBL	tr\|K4B1Z5\|K4B1Z5_SOLLC	1E-110	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g104200.2.1}
TAIR10	AT4G33790.1	3E-52	Jojoba acyl CoA reductase-related male sterility protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	98286949	98295552	+
GWHAAZE00000002	mRNA	98286949	98295552	+
GWHAAZE00000002	exon	98286949	98287062	+
GWHAAZE00000002	exon	98289930	98290132	+
GWHAAZE00000002	exon	98290366	98290466	+
GWHAAZE00000002	exon	98290538	98290583	+
GWHAAZE00000002	exon	98293136	98293217	+
GWHAAZE00000002	exon	98293735	98294001	+
GWHAAZE00000002	exon	98295181	98295308	+
GWHAAZE00000002	exon	98295399	98295552	+
GWHAAZE00000002	CDS	98286949	98287062	+
GWHAAZE00000002	CDS	98289930	98290132	+
GWHAAZE00000002	CDS	98290366	98290466	+
GWHAAZE00000002	CDS	98290538	98290583	+
GWHAAZE00000002	CDS	98293136	98293217	+
GWHAAZE00000002	CDS	98293735	98294001	+
GWHAAZE00000002	CDS	98295181	98295308	+
GWHAAZE00000002	CDS	98295399	98295552	+

Transcript Sequence
>GWHTAAZE008978 ATGGATATAGTTTTCGTGGAGAAGATACTTAGGGTTCAACCAAATGTGAAGAAGCTTTATCTTCTTCTTAGAGCTACGGATAGCAAGTCAGCATTAGAAAGGTTAAATCATGAGATAATTGCAAAGGACTTGTTTAAGGTTCTAAAAGAGAAATGGGGTACAAATCTAAATTCCCACATATCAGAAAAGGTGACCCCGGTAGCCGGTGACATAACTTATGACAACTTGGGAGTGGATGACTGTGATCTGTTGAAAGAGATGATGCAAAAAGTAGATGTTGTTGTTAACCTAGCTGCCACTACCAACTTTGATGAAAGGTATGATGTTGCGTTGGCTCTTAACACGTTGGGAGCTAAGCATGTGTTCAACTTTGCGAAGAATTGTGCTAATTTAAAATTGCTTCTACACGTATCAACAGATCCGGACTGCATTTATGTATCTAAAGGTTTCTTTGAGAACTTTGGAACTGTTGATAGCATGCTGGTTGGTTTTGGTAAAGGAAAATTGACATACTTCCTCGGAGATCCAGATTCTATTATTGACGCTATCCCAGCAGACATGGTGGTGAACGCTATGATAGCGGCCATGGCGGCTCATGCAAATCAACCTTTTGAGATTATATATCACGTTGGATCTTCCGTTACTAACGCCGTCAAGTACGGCTGTATTCAAGACTACGGCCTCCGTTACTTCACTAATAATCCATGGATTGACAAGGATGGAAACCGCGTCAAAGTTGGCAAATTAACGGTGATGACTTCCATTGCCAGCTTCCGTCGTTACATGACACTCCGTTATTTACTTCCACTAAAGGTGTTTAAGGTCGTGAATATAATACTTTGCCAATTTTTCGAAGGCACGTACGCAGACCTTAATCGAAAGATCAAGTTCGTAATGCGGTTGGTGGAACTTTATGAACCCTACTTGTTTTTTAAGGACATCCATGATGACAAAAATACGGGAAACTTGCGTATGGCAACAAGAAAGGGTGGCTCTGAGACAGATATTTTCTACTTTGATCCCAAATGTATTAACTGGGAGGACTACTTCATGAATATTCACATCCCTGGAATAGTCAAATACATATTTAAGTGA

Network for GWHGAAZE008968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07993.13	NAD_binding_4	4	139	3.10E-36
PF03015.20	Sterile	266	364	7.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13356	FAR	Cutin, suberine and wax biosynthesis	map00073
		Peroxisome	map04146
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.883
	SRR3591706	second leaf	0.611
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	5.291
	SRR3591709	Stem	0.130
	SRR3591710	White floral bud	0.628
	SRR3591711	White flower	0.122
	SRR3591712	Green floral bud	0.447
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.071
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.049
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.219
	CRR073319	Tawny withering 2	0.055
	CRR073320	Tawny withering 3	0.000