Detail information of GWHGAAZE008980


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002269920.20PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera]
Swissprottr|F4HW04|DPOE1_ARATH0DNA polymerase epsilon catalytic subunit A
trEMBLtr|V4SFA7|V4SFA7_9ROSI0DNA polymerase {ECO:0000256|RuleBase:RU000442}
TAIR10AT1G08260.10DNA polymerase epsilon catalytic subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene9878929198843193-
GWHAAZE00000002mRNA9878929198843193-
GWHAAZE00000002exon9878929198789728-
GWHAAZE00000002exon9879135298791458-
GWHAAZE00000002exon9879290798793119-
GWHAAZE00000002exon9879348798793657-
GWHAAZE00000002exon9879458498794730-
GWHAAZE00000002exon9879614998796215-
GWHAAZE00000002exon9879630598796465-
GWHAAZE00000002exon9879710098797148-
GWHAAZE00000002exon9879723698797498-
GWHAAZE00000002exon9879830798798381-
GWHAAZE00000002exon9879867898798761-
GWHAAZE00000002exon9879906498799165-
GWHAAZE00000002exon9879927598799407-
GWHAAZE00000002exon9880056898800753-
GWHAAZE00000002exon9880148898801678-
GWHAAZE00000002exon9880209798802171-
GWHAAZE00000002exon9880263698802833-
GWHAAZE00000002exon9880996298810100-
GWHAAZE00000002exon9881114898811581-
GWHAAZE00000002exon9881165998811801-
GWHAAZE00000002exon9881188098811934-
GWHAAZE00000002exon9881361198813811-
GWHAAZE00000002exon9881418998814284-
GWHAAZE00000002exon9881462098814763-
GWHAAZE00000002exon9881488098814960-
GWHAAZE00000002exon9881511598815202-
GWHAAZE00000002exon9881598398816159-
GWHAAZE00000002exon9881654198816620-
GWHAAZE00000002exon9881673698816841-
GWHAAZE00000002exon9881752298817616-
GWHAAZE00000002exon9881769298817833-
GWHAAZE00000002exon9881791998818037-
GWHAAZE00000002exon9882826198828334-
GWHAAZE00000002exon9882906798829175-
GWHAAZE00000002exon9882939098829503-
GWHAAZE00000002exon9883553198835707-
GWHAAZE00000002exon9883594098836104-
GWHAAZE00000002exon9883655098836633-
GWHAAZE00000002exon9883949598839629-
GWHAAZE00000002exon9883971698839802-
GWHAAZE00000002exon9884034698840563-
GWHAAZE00000002exon9884068198840769-
GWHAAZE00000002exon9884106798841227-
GWHAAZE00000002exon9884153698841631-
GWHAAZE00000002exon9884172498841783-
GWHAAZE00000002exon9884228598842350-
GWHAAZE00000002exon9884302098843193-
GWHAAZE00000002CDS9884302098843193-
GWHAAZE00000002CDS9884228598842350-
GWHAAZE00000002CDS9884172498841783-
GWHAAZE00000002CDS9884153698841631-
GWHAAZE00000002CDS9884106798841227-
GWHAAZE00000002CDS9884068198840769-
GWHAAZE00000002CDS9884034698840563-
GWHAAZE00000002CDS9883971698839802-
GWHAAZE00000002CDS9883949598839629-
GWHAAZE00000002CDS9883655098836633-
GWHAAZE00000002CDS9883594098836104-
GWHAAZE00000002CDS9883553198835707-
GWHAAZE00000002CDS9882939098829503-
GWHAAZE00000002CDS9882906798829175-
GWHAAZE00000002CDS9882826198828334-
GWHAAZE00000002CDS9881791998818037-
GWHAAZE00000002CDS9881769298817833-
GWHAAZE00000002CDS9881752298817616-
GWHAAZE00000002CDS9881673698816841-
GWHAAZE00000002CDS9881654198816620-
GWHAAZE00000002CDS9881598398816159-
GWHAAZE00000002CDS9881511598815202-
GWHAAZE00000002CDS9881488098814960-
GWHAAZE00000002CDS9881462098814763-
GWHAAZE00000002CDS9881418998814284-
GWHAAZE00000002CDS9881361198813811-
GWHAAZE00000002CDS9881188098811934-
GWHAAZE00000002CDS9881165998811801-
GWHAAZE00000002CDS9881114898811581-
GWHAAZE00000002CDS9880996298810100-
GWHAAZE00000002CDS9880263698802833-
GWHAAZE00000002CDS9880209798802171-
GWHAAZE00000002CDS9880148898801678-
GWHAAZE00000002CDS9880056898800753-
GWHAAZE00000002CDS9879927598799407-
GWHAAZE00000002CDS9879906498799165-
GWHAAZE00000002CDS9879867898798761-
GWHAAZE00000002CDS9879830798798381-
GWHAAZE00000002CDS9879723698797498-
GWHAAZE00000002CDS9879710098797148-
GWHAAZE00000002CDS9879630598796465-
GWHAAZE00000002CDS9879614998796215-
GWHAAZE00000002CDS9879458498794730-
GWHAAZE00000002CDS9879348798793657-
GWHAAZE00000002CDS9879290798793119-
GWHAAZE00000002CDS9879135298791458-
GWHAAZE00000002CDS9878936898789728-
GWHAAZE00000002three_prime_UTR9878929198789367-
Transcript Sequence

Network for GWHGAAZE008980

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03104.20DNA_pol_B_exo1803551.30E-71
PF00136.22DNA_pol_B75210465.70E-15
PF08490.13DUF1744151418374.20E-103
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02324POLE DNA replication map03030
Base excision repairmap03410
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0006260biological_processDNA replication
GO:0005634cellular_componentnucleus
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
GO:0003676molecular_functionnucleic acid binding
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.141
SRR3591706second leaf0.622
SRR3591707mature leaf0.346
SRR3591708Shoot apex6.361
SRR3591709Stem1.053
SRR3591710White floral bud0.356
SRR3591711White flower0.388
SRR3591712Green floral bud0.456
SRR3591713Yellow flower0.078
SRP173429 SRR8316895Juvenile bud stage 1.628
SRR8316896Juvenile bud stage 2.381
SRR8316897Juvenile bud stage 0.877
SRR8316894Third green stage 0.830
SRR8316900Third green stage 1.332
SRR8316901Third green stage 1.191
SRR8316898Complete white stage 0.078
SRR8316899Complete white stage 0.700
SRR8316903Complete white stage 0.176
SRR8316902Silver flowering stage0.046
SRR8316904Silver flowering stage0.089
SRR8316905Silver flowering stage0.007
SRR8316906Gold flowering stage 0.207
SRR8316907Gold flowering stage 0.081
SRR8316908Gold flowering stage 0.065
SRP132670SRR6706286Control0.894
SRR6706287Light intensity 50%1.047
SRR6706288Light intensity 20%1.246
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.254
CNS0095593Slightly white alabastrum(diploid) 20.436
CNS0095594Slightly white alabastrum(diploid) 30.934
CNS0095595Whole white alabastrum(diploid) 20.538
CNS0095596Whole white alabastrum(diploid) 30.338
CNS0095597Whole white alabastrum(diploid) 40.333
CNS0095598Silvery flower (diploied) 11.063
CNS0095599Silvery flower (diploied) 21.182
CNS0095600Silvery flower (diploied) 30.417
CNS0095601Golden flower (diploid) 10.446
CNS0095602Golden flower (diploid) 20.304
CNS0095603Golden flower (diploid) 30.323
CNS0095604Slightly white alabastrum(tetraploid) 11.105
CNS0095605Slightly white alabastrum(tetraploid) 20.955
CNS0095606Slightly white alabastrum(tetraploid) 31.728
CNS0095607Whole white alabastrum(tetraploid) 10.409
CNS0095608Whole white alabastrum(tetraploid) 20.401
CNS0095609Whole white alabastrum(tetraploid) 31.146
CNS0095610Silvery flower (tetraploid) 10.404
CNS0095611Silvery flower (tetraploid) 20.375
CNS0095612Silvery flower (tetraploid) 30.229
CNS0095613Golden flower (tetraploid) 10.132
CNS0095614Golden flower (tetraploid) 20.184
CNS0095615Golden flower (tetraploid) 30.095
CRA001975CRR073297Stem 12.101
CRR073298Stem 21.890
CRR073299Stem 31.290
CRR073300Leaf 10.875
CRR073301Leaf 20.772
CRR073302Leaf 30.507
CRR073303Juvenile bud 10.478
CRR073304Juvenile bud 20.179
CRR073305Juvenile bud 30.334
CRR073306Third green 10.013
CRR073307Third green 20.017
CRR073308Third green 30.023
CRR073309Second white 10.003
CRR073310Second white 20.009
CRR073311Second white 30.000
CRR073312Silver flowering 10.009
CRR073313Silver flowering 20.015
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.182
CRR073316Gold flowering 20.099
CRR073317Gold flowering 30.076
CRR073318Tawny withering 11.290
CRR073319Tawny withering 21.016
CRR073320Tawny withering 31.583