Gene detail

Detail information of GWHGAAZE008987

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006471388.1	PREDICTED: histone deacetylase 9-like [Citrus sinensis]
Swissprot	tr\|Q8H0W2\|HDA9_ARATH	Histone deacetylase 9
trEMBL	tr\|V4SKE1\|V4SKE1_9ROSI	Histone deacetylase {ECO:0000256\|PIRNR:PIRNR037913}
TAIR10	AT3G44680.1	histone deacetylase 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99105354	99117555	+
GWHAAZE00000002	mRNA	99105354	99117555	+
GWHAAZE00000002	exon	99105354	99105390	+
GWHAAZE00000002	exon	99105584	99105657	+
GWHAAZE00000002	exon	99106105	99106222	+
GWHAAZE00000002	exon	99106928	99107020	+
GWHAAZE00000002	exon	99107085	99107304	+
GWHAAZE00000002	exon	99109091	99109154	+
GWHAAZE00000002	exon	99109904	99109996	+
GWHAAZE00000002	exon	99110098	99110206	+
GWHAAZE00000002	exon	99110351	99110400	+
GWHAAZE00000002	exon	99110483	99110573	+
GWHAAZE00000002	exon	99115173	99115243	+
GWHAAZE00000002	exon	99115557	99115655	+
GWHAAZE00000002	exon	99117283	99117349	+
GWHAAZE00000002	exon	99117470	99117555	+
GWHAAZE00000002	CDS	99105354	99105390	+
GWHAAZE00000002	CDS	99105584	99105657	+
GWHAAZE00000002	CDS	99106105	99106222	+
GWHAAZE00000002	CDS	99106928	99107020	+
GWHAAZE00000002	CDS	99107085	99107304	+
GWHAAZE00000002	CDS	99109091	99109154	+
GWHAAZE00000002	CDS	99109904	99109996	+
GWHAAZE00000002	CDS	99110098	99110206	+
GWHAAZE00000002	CDS	99110351	99110400	+
GWHAAZE00000002	CDS	99110483	99110573	+
GWHAAZE00000002	CDS	99115173	99115243	+
GWHAAZE00000002	CDS	99115557	99115655	+
GWHAAZE00000002	CDS	99117283	99117349	+
GWHAAZE00000002	CDS	99117470	99117555	+

Transcript Sequence
>GWHTAAZE008997 ATGCGCTCTAAGGACAGGATATCCTACTTTTACGACGGAGATGTTGGTAGTGTTTACTTTGGGCCTAACCATCCAATGAAGCCTCACCGTTTATGTATGACTCATCATCTCAGGCCTCACAAGGCGTATCCGGTTGAGCTTGCTCAGTTTCATTCGGCTGATTATGTGGAGTTTTTGCATCGGATAAACCCAGACACGCAGCATTTGTTTGCCAACGAATTAGCGAAATATAATCTCGGAGAAGATTGCCCAGTCTTTGAGAACTTGTTTGAGTTCTGTCAAATTTATGCTGGTGGAACGATAGGCAAGTTCAACCCTGATGATGCTGCACGCAGATTGAACAATCAGCTTTGTGACATTGCTATTAATTGGGCTGGTGGATTACACCATGCTAAGAAGTGTGAGGCTTCTGGATTTTGTTACATCAATGACTTGGTTTTGGGGATTTTGGAGCTTCTGAAGTATCATGCTCGTGTGTTGTATATTGATATAGATGTCCATCATGGTGATGGGGTAGAAGAAGCCTTCTATTTCACTGATAGGGTGATGACTGTTAGCTTTCACAAGTATGGGGATTTGTTCTTTCCTGGAACAGGTGATATGAAGGAAGTTGGAGAACGAGAAGGAAAATTTTACGCCATAAATGTCCCTCTCAAGGATGGAATAGATGACATCAGCTTTACTCGACTGTTCAAAACAATTATTGCGAAGGTTGTTGAAACTTATTTACCAGGCGTGATAGTTCTCCAATGTGGGGCTGATTCACTTGCCGGTGACCGCTTGGGCTGCTTCAACCTCTCCATTGATGGTCATGCTGAATGCGTTAGGTTTGTGAAGAAGTTTAATTTGCCTCTGCTGGTAACTGGAGGTGGGGGCTATACAAAAGAGAATGTTGCTCGGTGTTGGACTGTCGAAACTGGAGTGCTTTTAGACACAGAACTTCCCAATGAGATCCCAGAAAATGAGTATAGTAAATATTTTGCTCCAGATAATTCATTGAGGGTTCCGCACGGCCACATTGAGAACTTAAATAGCAAATCATATCTTGGCACGATAAAAATGCAAGTGCTAGAAAATCTTCGTAGCATCCAGCATGCTCCCAGCGTACAGATGCAAGAGGTTCCACCTGATTTTTACATCCCTGAATTTGATGAAGACGAGCAGAACCCTGATGAACGTGTGGACCAGCACAGCCAAGACAAGCATATCCAACGTGATGATGAATATTATGATGGTGATAACGACAACGATCATAATTTGGACGATGTGTGA

Network for GWHGAAZE008987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00850.20	Hist_deacetyl	34	306	9.50E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06067	HDAC1_2	Notch signaling pathway	map04330
		Cell cycle	map04110
		Thyroid hormone signaling pathway	map04919
		Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0016575	biological_process	histone deacetylation
GO:0004407	molecular_function	histone deacetylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.630
	SRR3591706	second leaf	10.031
	SRR3591707	mature leaf	10.700
	SRR3591708	Shoot apex	15.922
	SRR3591709	Stem	16.578
	SRR3591710	White floral bud	22.365
	SRR3591711	White flower	24.778
	SRR3591712	Green floral bud	12.664
	SRR3591713	Yellow flower	25.757
SRP173429	SRR8316895	Juvenile bud stage	9.516
	SRR8316896	Juvenile bud stage	13.897
	SRR8316897	Juvenile bud stage	5.054
	SRR8316894	Third green stage	5.193
	SRR8316900	Third green stage	13.149
	SRR8316901	Third green stage	13.477
	SRR8316898	Complete white stage	9.629
	SRR8316899	Complete white stage	23.003
	SRR8316903	Complete white stage	15.781
	SRR8316902	Silver flowering stage	9.886
	SRR8316904	Silver flowering stage	11.903
	SRR8316905	Silver flowering stage	7.090
	SRR8316906	Gold flowering stage	21.565
	SRR8316907	Gold flowering stage	21.060
	SRR8316908	Gold flowering stage	17.401
SRP132670	SRR6706286	Control	11.111
	SRR6706287	Light intensity 50%	13.094
	SRR6706288	Light intensity 20%	12.470
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.784
	CNS0095593	Slightly white alabastrum(diploid) 2	10.166
	CNS0095594	Slightly white alabastrum(diploid) 3	10.619
	CNS0095595	Whole white alabastrum(diploid) 2	9.293
	CNS0095596	Whole white alabastrum(diploid) 3	8.295
	CNS0095597	Whole white alabastrum(diploid) 4	8.574
	CNS0095598	Silvery flower (diploied) 1	18.257
	CNS0095599	Silvery flower (diploied) 2	13.290
	CNS0095600	Silvery flower (diploied) 3	15.017
	CNS0095601	Golden flower (diploid) 1	14.037
	CNS0095602	Golden flower (diploid) 2	17.579
	CNS0095603	Golden flower (diploid) 3	17.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.253
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.655
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.103
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.076
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.066
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.249
	CNS0095610	Silvery flower (tetraploid) 1	20.655
	CNS0095611	Silvery flower (tetraploid) 2	19.081
	CNS0095612	Silvery flower (tetraploid) 3	20.930
	CNS0095613	Golden flower (tetraploid) 1	16.025
	CNS0095614	Golden flower (tetraploid) 2	17.768
	CNS0095615	Golden flower (tetraploid) 3	24.522
CRA001975	CRR073297	Stem 1	15.082
	CRR073298	Stem 2	13.837
	CRR073299	Stem 3	11.891
	CRR073300	Leaf 1	13.810
	CRR073301	Leaf 2	13.688
	CRR073302	Leaf 3	12.100
	CRR073303	Juvenile bud 1	9.648
	CRR073304	Juvenile bud 2	8.783
	CRR073305	Juvenile bud 3	10.544
	CRR073306	Third green 1	7.482
	CRR073307	Third green 2	8.247
	CRR073308	Third green 3	6.899
	CRR073309	Second white 1	8.275
	CRR073310	Second white 2	11.340
	CRR073311	Second white 3	12.430
	CRR073312	Silver flowering 1	10.146
	CRR073313	Silver flowering 2	12.109
	CRR073314	Silver flowering 3	10.257
	CRR073315	Gold flowering 1	11.195
	CRR073316	Gold flowering 2	16.758
	CRR073317	Gold flowering 3	9.998
	CRR073318	Tawny withering 1	16.396
	CRR073319	Tawny withering 2	14.468
	CRR073320	Tawny withering 3	9.280