Gene detail

Detail information of GWHGAAZE008995

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009777029.1	2.18146E-75	PREDICTED: dehydration-responsive element-binding protein 1B-like [Nicotiana sylvestris]
Swissprot	tr\|Q9SYS6\|DRE1C_ARATH	3E-58	Dehydration-responsive element-binding protein 1C
trEMBL	tr\|M1DGQ8\|M1DGQ8_SOLTU	1E-71	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400088795}
TAIR10	AT4G25490.1	6E-35	C-repeat/DRE binding factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	99263869	99264561	-
GWHAAZE00000002	mRNA	99263869	99264561	-
GWHAAZE00000002	exon	99264037	99264561	-
GWHAAZE00000002	exon	99263869	99264003	-
GWHAAZE00000002	CDS	99264037	99264561	-
GWHAAZE00000002	CDS	99263869	99264003	-

Transcript Sequence
>GWHTAAZE009005 ATGCAGTTTCTTGAACATCAATCTCCACCTTCTTCATCTTCATCATCGTCTTCTTGTGGCATTTCAAAAACTATTACTAATAATCCATTGCCTAATTTACGACAGATAAAAAACAAGCGAAATGCTGGGAGAAAGAAGTTCAAAGAGACTCGCCATCCGATTTATAGAGGGGTTCGTTGCAAGAACTCCAGTAAATGGGTGTGTGAAGTGCGCGAGCCAAACAAGAAGTCAAGAATATGGCTCGGCACGTTCCAGACTCCAGAGATGGCTGCGCGGGCCCACGACGTGGCCGCATTGGCGCTCAGGGGAGAGAGGGCCGAGCTCAACTTCCCAGACTCTGCTTGGAGTCTGAAGAGAGCTCGATCATCTACTCCTAAGGATATACAAATGGCGGCTTTTGAAGCTGCCCAGGCTTTTCAGGGGTCGACAGATAATTATTATCCCTCTCCTGCTCTGCCCTTGACTGGTTTAACTGGTGTGGAGAGTATATATAATATTTCAAAATGTTCGCTAATTGTGGAGTCAGAGGCGATGTTTAACTTGCCGAGCTTGATCGATAGTATGGCGGAAGGTTTGCTACTAACTCCGCCAGCCATGAAGAGAGGATTCAATTGGGGGGAGATGGATTGCAATATTGACTTAACTTTGTGGAGGGACTAA

Network for GWHGAAZE008995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	53	104	2.30E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.282
	SRR3591706	second leaf	0.290
	SRR3591707	mature leaf	0.995
	SRR3591708	Shoot apex	0.528
	SRR3591709	Stem	0.282
	SRR3591710	White floral bud	7.786
	SRR3591711	White flower	5.183
	SRR3591712	Green floral bud	0.526
	SRR3591713	Yellow flower	0.158
SRP173429	SRR8316895	Juvenile bud stage	8.072
	SRR8316896	Juvenile bud stage	0.376
	SRR8316897	Juvenile bud stage	7.656
	SRR8316894	Third green stage	0.127
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.005
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	4.875
	SRR8316903	Complete white stage	0.630
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.048
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.091
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.153
SRP132670	SRR6706286	Control	0.205
	SRR6706287	Light intensity 50%	0.177
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.545
	CNS0095593	Slightly white alabastrum(diploid) 2	5.912
	CNS0095594	Slightly white alabastrum(diploid) 3	10.433
	CNS0095595	Whole white alabastrum(diploid) 2	8.687
	CNS0095596	Whole white alabastrum(diploid) 3	0.094
	CNS0095597	Whole white alabastrum(diploid) 4	3.977
	CNS0095598	Silvery flower (diploied) 1	20.241
	CNS0095599	Silvery flower (diploied) 2	23.868
	CNS0095600	Silvery flower (diploied) 3	4.391
	CNS0095601	Golden flower (diploid) 1	18.524
	CNS0095602	Golden flower (diploid) 2	19.810
	CNS0095603	Golden flower (diploid) 3	16.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.024
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.359
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.169
	CNS0095611	Silvery flower (tetraploid) 2	0.332
	CNS0095612	Silvery flower (tetraploid) 3	1.116
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	5.194
	CRR073298	Stem 2	2.048
	CRR073299	Stem 3	3.377
	CRR073300	Leaf 1	0.274
	CRR073301	Leaf 2	1.359
	CRR073302	Leaf 3	0.659
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	8.373
	CRR073305	Juvenile bud 3	0.324
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.402
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.324
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.157
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.612
	CRR073316	Gold flowering 2	3.919
	CRR073317	Gold flowering 3	10.381
	CRR073318	Tawny withering 1	4.760
	CRR073319	Tawny withering 2	48.488
	CRR073320	Tawny withering 3	1.196